PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00019999-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | bHLH | ||||||||
Protein Properties | Length: 640aa MW: 71107 Da PI: 8.1986 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.6 | 6.8e-11 | 181 | 231 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 rah+ +Er RR+++++ ++L +llP+ +++K + ++ L +Ave+I++Lq PSME_00019999-RA 181 RAHKLVERHRRNKMRTLCSTLISLLPEeY---RKTKHTLSDKLLEAVEHIRHLQ 231 78*************************77...*********************9 PP | |||||||
2 | HLH | 16.7 | 1.3e-05 | 483 | 509 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 ah+ +Er RR+++++ ++L +llP+ PSME_00019999-RA 483 AHKLVERHRRNKMRTLCSTLISLLPEE 509 8************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.909 | 178 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.02E-11 | 181 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.18E-10 | 181 | 234 | No hit | No description |
Pfam | PF00010 | 1.0E-7 | 181 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.0E-11 | 182 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-4 | 184 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.1E-6 | 483 | 511 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 640 aa Download sequence Send to blast |
MFSEGQRLRM EDLWRTILYK YPYELCSSSY SQAAACLPHY PANIIDTNEG IQIQTQTKSV 60 KVLETRSCID DDAPATVILD ALSTKRPHDY GMLETAPLCP MVQLDRSGAD DSSPAITHVW 120 QKFVANIGEP DQTLTCNIAA NSFLNSGGPL FHPTTSRQKK KTGRGMGQHH EAGRECIGNN 180 RAHKLVERHR RNKMRTLCST LISLLPEEYR KTKHTLSDKL LEAVEHIRHL QEKLVELGKK 240 RDELKAAIKR FSHSSCVCES LQDSEVRPSN VRDKFQTTRV SKFGEGIQVT VNTFKNHIDF 300 SSILMVLEGA GLEVVSATVS AVGDRVFYSV HSKAAACLPH YPANIIDTNE GIQIQTQTKS 360 VKVLETRSCI DDDAPATVIL DALSTKRPHD YCLLETAPLC PMVQLDRSGA DDSSPAITHV 420 WQKFVANIGQ PDQTLTCNIA ANSFLNSGGP LFHPTTSRQK KKTGGGMGQH HEAGMESIGN 480 NHAHKLVERH RRNKMRTLCS TLISLLPEEY RKLVELGKNR DELKAAIKPF SHSSCVCESL 540 QDSEVRPSNV RDKFQTSRVS KFGEGIQVTV NTFKSHIDFS SILMVLEGAG LEVVSATVSA 600 VGDRVFYSIH SKLSDFRNFD CAVLHGTIDQ LMNTKLPMVK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 4e-14 | bHLH family protein |