PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00019920-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 382aa MW: 43391.1 Da PI: 4.9389

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00019920-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	204.4	3.4e-63	220	339	1	120
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp flgpkcalwdc+rp+qgs+w+qdycs+fh ++alneg+p + p+lrp+gidlkdg+lf a+ ak+ k+ gipecegaat+kspwna+ PSME_00019920-RA 220 PPPEDFLGPKCALWDCPRPTQGSDWCQDYCSNFHGMVALNEGPPSMGPILRPRGIDLKDGALFIAIGAKTVVKSFGIPECEGAATKKSPWNAP 312 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafe 120 elfdl +l+ge irewlffdkprr fe PSME_00019920-RA 313 ELFDLFVLQGEFIREWLFFDKPRRDFE 339 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MDCTRIDKFH MMGKRSKSMS KSTTHQLFKI KTKNRGMFTD LQHVRKESQV NDALVLDDQV 60 HQLPREWKAE LHEQSPTTSM LEASLCSSDL SCDMWRLLQL HEEEDDATKI LAAPYNSKLQ 120 LNENTLEAAN PSSFQEAIPP NEMRKDFYVD HANAEAQNID GTSRSENIHT ESLLQTTNEG 180 LEAAAQMNQY FDHNLCLSLD PQVEEERIPK FQGPCPGISP PPEDFLGPKC ALWDCPRPTQ 240 GSDWCQDYCS NFHGMVALNE GPPSMGPILR PRGIDLKDGA LFIAIGAKTV VKSFGIPECE 300 GAATKKSPWN APELFDLFVL QGEFIREWLF FDKPRRDFEK YEMNNCDACA LYRLELKQVN 360 SMKITKEKVM GDYVNTEKVT TN

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MDCTRIDKFH MMGKRSKSMS KSTTHQLFKI KTKNRGMFTD LQHVRKESQV NDALVLDDQV  60
HQLPREWKAE LHEQSPTTSM LEASLCSSDL SCDMWRLLQL HEEEDDATKI LAAPYNSKLQ  120
LNENTLEAAN PSSFQEAIPP NEMRKDFYVD HANAEAQNID GTSRSENIHT ESLLQTTNEG  180
LEAAAQMNQY FDHNLCLSLD PQVEEERIPK FQGPCPGISP PPEDFLGPKC ALWDCPRPTQ  240
GSDWCQDYCS NFHGMVALNE GPPSMGPILR PRGIDLKDGA LFIAIGAKTV VKSFGIPECE  300
GAATKKSPWN APELFDLFVL QGEFIREWLF FDKPRRDFEK YEMNNCDACA LYRLELKQVN  360
SMKITKEKVM GDYVNTEKVT TN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021660497.1	1e-114	transcription factor VOZ1-like
Swissprot	Q9SGQ0	1e-102	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A5CA22	1e-111	A5CA22_VITVI; Uncharacterized protein
TrEMBL	F6H4X2	1e-110	F6H4X2_VITVI; Uncharacterized protein
STRING	VIT_12s0028g02670.t01	1e-111	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-99	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]