PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00019623-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 160aa MW: 18828.4 Da PI: 4.6991 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.6 | 3.2e-09 | 81 | 119 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +++eE++l+++ k+ G++ W++Ia +++ gR ++++ +w PSME_00019623-RA 81 MSEEEEDLILRMYKLIGNK-WSLIAGRIP-GRKEEEIERYW 119 69*****************.*********.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0017 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-8 | 81 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.56E-6 | 81 | 119 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-12 | 82 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.737 | 82 | 119 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.73E-7 | 82 | 124 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MQFLIEQWRD HLPPGYLLKK ASIDTPFEED ACRCHFVFVK DRNVYDEAEL ALRLQWFIGE 60 KTPTKFEIIK EGSSLDWECD MSEEEEDLIL RMYKLIGNKW SLIAGRIPGR KEEEIERYWA 120 MRTQQFCDSH GATIFASNKQ MGNMISIPYH INGCNDVEVN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 5e-22 | MYB_related family protein |