PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00019013-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 404aa MW: 44815.1 Da PI: 5.2979

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00019013-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	116.1	3.6e-36	210	298	1	101
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp aflgpkcalwdc+rpaqg +w+qdycs+fh ++alne gidlkdgllfa+l ak+ k+ gip+cegaat+kspwna+ PSME_00019013-RA 210 PPPKAFLGPKCALWDCPRPAQGPDWCQDYCSNFHGMVALNE------------GIDLKDGLLFATLGAKTMVKSFGIPKCEGAATKKSPWNAP 290 89***********************************98............79************************************ PP VOZ 94 elfdlsll 101 e+ + ++l PSME_00019013-RA 291 EVNEKAVL 298 *9887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03141	1.4E-35	320	404	IPR004159	Putative S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	3.26E-6	331	403	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	2.9E-4	336	403	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008168	Molecular Function	methyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MMGKRSKSMP KSITHQLFKT KAKNRGMFND LQQVRKESRV NDALVLEEHV HQLPWECKAE 60 LHEESPTTSM LEASLCLSDL SCDMWRLLQL HEEEDDATNI IVAPYSSKLQ LNENTLEAAN 120 PSSFQEAIPP NEMRKDFYVD HANAEAQNID GTSRSENIHT ESLLQNTDES LEAAAQMNRY 180 FDNNLCLSLD PKVEEEHMPK FQGPCPGISP PPKAFLGPKC ALWDCPRPAQ GPDWCQDYCS 240 NFHGMVALNE GIDLKDGLLF ATLGAKTMVK SFGIPKCEGA ATKKSPWNAP EVNEKAVLLQ 300 AAALPGMVNP MEESVAPLPE KMVPNVAWGV HTRVGLDVGC GVAIFGAFFL SRNVSTLSIV 360 SKDVHENQIQ FSLERGVPAM VAAFATRRLL YPSQAFEMIH CSRC

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MMGKRSKSMP KSITHQLFKT KAKNRGMFND LQQVRKESRV NDALVLEEHV HQLPWECKAE  60
LHEESPTTSM LEASLCLSDL SCDMWRLLQL HEEEDDATNI IVAPYSSKLQ LNENTLEAAN  120
PSSFQEAIPP NEMRKDFYVD HANAEAQNID GTSRSENIHT ESLLQNTDES LEAAAQMNRY  180
FDNNLCLSLD PKVEEEHMPK FQGPCPGISP PPKAFLGPKC ALWDCPRPAQ GPDWCQDYCS  240
NFHGMVALNE GIDLKDGLLF ATLGAKTMVK SFGIPKCEGA ATKKSPWNAP EVNEKAVLLQ  300
AAALPGMVNP MEESVAPLPE KMVPNVAWGV HTRVGLDVGC GVAIFGAFFL SRNVSTLSIV  360
SKDVHENQIQ FSLERGVPAM VAAFATRRLL YPSQAFEMIH CSRC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021660497.1	3e-76	transcription factor VOZ1-like
Swissprot	Q9SGQ0	1e-68	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	B9S936	1e-73	B9S936_RICCO; Uncharacterized protein
STRING	XP_002522505.1	2e-74	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	4e-71	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]