PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018789-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 313aa    MW: 34655.4 Da    PI: 5.027
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018789-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.8e-0825491945
                      TTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwq 45
                       G++ W++Ia+ ++ g+t++++k++w 
  PSME_00018789-RA 25 CGNR-WSSIASQLP-GKTDNEIKNFWT 49
                      6999.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.1212152IPR017877Myb-like domain
SuperFamilySSF466897.5E-82163IPR009057Homeodomain-like
PfamPF002492.0E-62450IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-112564IPR009057Homeodomain-like
CDDcd001671.00E-52752No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MVILLTGKII PRVKMHSVYA GLPRCGNRWS SIASQLPGKT DNEIKNFWTT SLKKRLLKMG  60
LDPSTHAPKT TEANPTDPEK SVALALMRHK AQWENARLEA ESRFSRASLL MSTNNSTAVM  120
ETTTMPNNNP PADYFLRIWN SEAGKSFRKE NHHPNGGGDP VLLPETPLNS VSSLCCATTQ  180
NNRGQSSNPN DKDNDNSASF EWFGDCNVNT TEEISCFPDI SHMTMGQTED KAAEEFLFPE  240
LLYFTDNDNN NNNTNSIQTE LIAGFQQPPV SPWPELHQED YSNNMSFNAH DASSQYSSDS  300
GSALCPSNLC TVG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-35myb domain protein 17