PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00018761-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 157aa MW: 17596.7 Da PI: 9.6547 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.5 | 4.1e-15 | 64 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++++ +G g W+t + + g+ ++k c++rw +yl PSME_00018761-RA 64 KGPWTPEEDLRLINYISAHGEGKWRTLPMKAGLLHCGKGCRLRWVNYL 111 79******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.342 | 59 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-19 | 62 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-10 | 63 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-13 | 64 | 111 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.35E-17 | 65 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.32E-8 | 66 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.3E-4 | 111 | 129 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MAATNGQPKI LILFLCAILL LSTANAIRSL ATVCFLRIAL GDTNSKMGRT LTPISCCSYA 60 GLKKGPWTPE EDLRLINYIS AHGEGKWRTL PMKAGLLHCG KGCRLRWVNY LRPNVKRGHI 120 SPDEEEMIKM GRELQTELDF NTFSLAFKIR NLAFNEV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767562.1 | 4e-36 | PREDICTED: transcription repressor MYB5-like | ||||
Refseq | XP_016487365.1 | 4e-36 | PREDICTED: transcription repressor MYB5-like | ||||
TrEMBL | A0A2R6QTU4 | 5e-35 | A0A2R6QTU4_ACTCH; Transcription repressor like | ||||
STRING | XP_009767562.1 | 2e-35 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60890.1 | 1e-33 | myb domain protein 34 |