PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00018694-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | B3 | ||||||||
Protein Properties | Length: 225aa MW: 25330.2 Da PI: 6.6227 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 30.5 | 6.2e-10 | 5 | 47 | 55 | 99 |
ETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 55 ksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ + ++++GW+ Fv+++ ++ +Df+vF++++++ f +v++f++ PSME_00018694-RA 5 SGTSAFFKDGWEIFVSDHSIQPNDFIVFRHVNDMHF--LVQIFES 47 556789***********************9999999..***9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.532 | 1 | 48 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.05E-9 | 2 | 45 | No hit | No description |
SuperFamily | SSF101936 | 5.69E-11 | 3 | 53 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.9E-7 | 5 | 47 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-10 | 7 | 49 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MIYGSGTSAF FKDGWEIFVS DHSIQPNDFI VFRHVNDMHF LVQIFESSGY EKQSTFTVKD 60 CESCHLNKRG MSTICNHNSN IGKKKFIGES IFEQERPKGN PLVHAIGDVE STKKRFIQGT 120 GMKVHITETC VETSIANHRS FSPKSHEFLD HCKISVKHTS RHQNSKWNFS ENQMGLSAKQ 180 PIILDSEDES DSQASPAYGH DQDTIASCHS GSEPFQEELS SLGKI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17010.1 | 2e-06 | B3 family protein |