PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00017701-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

M-type_MADS

Protein Properties

Length: 322aa MW: 36113.4 Da PI: 9.6471

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00017701-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58.3	9.6e-19	9	43	1	35
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaev 35 krien + rqvtfskRrn +lKKA+ELSvLCda++ PSME_00017701-RA 9 KRIENATSRQVTFSKRRNRLLKKAYELSVLCDAKA 43 79******************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-19	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	21.516	1	42	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.92E-17	1	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-15	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-16	10	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-15	23	38	IPR002100	Transcription factor, MADS-box
TIGRFAMs	TIGR00728	1.3E-46	135	305	IPR004813	Oligopeptide transporter, OPT superfamily
Pfam	PF03169	4.1E-28	135	304	IPR004813	Oligopeptide transporter, OPT superfamily

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055085	Biological Process	transmembrane transport
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MVRGKTLMKR IENATSRQVT FSKRRNRLLK KAYELSVLCD AKAQPRRVRG PNLAHQLTPS 60 SLVFRPDAVL MLLRKAYKDN HLGHLCRSAP VADYSSLFGG EFKLSEEDAS DISSLNILDI 120 AALEEALLHI LYACASQLVG TIVAGTINLC ISWWMPTGIE NICDVDSLPP DSPWMCPKDR 180 VAFDASVIWG LVGPKHLFGP LGPYKSLVWL FLVGALLPGI VCILSKLFHK AEWLKLINIP 240 VILGGFSSMP PATPVNIGTW IIIGTIFNYF IFRLRRWWWQ RYNYVLSASM DAGTTFMGVL 300 LYFSLGSENK GLKWWGTKID QP

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner. Acts also as a metal transporter that could be a component of the copper transport machinery. Essential for early embryo development. {ECO:0000269\|PubMed:11788749, ECO:0000269\|PubMed:12417702, ECO:0000269\|PubMed:13129917}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Highly induced by iron, copper and manganese deficiencies. {ECO:0000269\|PubMed:13129917}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ060510	1e-118	FJ060510.2 Pinus taeda isolate 1581 anonymous locus 0_16808_01 genomic sequence.
GenBank	FJ060513	1e-118	FJ060513.2 Pinus taeda isolate 1592 anonymous locus 0_16808_01 genomic sequence.
GenBank	FJ060514	1e-118	FJ060514.2 Pinus taeda isolate 1598 anonymous locus 0_16808_01 genomic sequence.
GenBank	FJ060515	1e-118	FJ060515.2 Pinus taeda isolate 1584 anonymous locus 0_16808_01 genomic sequence.
GenBank	FJ060517	1e-118	FJ060517.2 Pinus taeda isolate 1596 anonymous locus 0_16808_01 genomic sequence.
GenBank	FJ060520	1e-118	FJ060520.2 Pinus taeda isolate 1587 anonymous locus 0_16808_01 genomic sequence.
GenBank	FJ060521	1e-118	FJ060521.2 Pinus taeda isolate 1590 anonymous locus 0_16808_01 genomic sequence.
GenBank	FJ060522	1e-118	FJ060522.2 Pinus taeda isolate 1589 anonymous locus 0_16808_01 genomic sequence.
GenBank	FJ060525	1e-118	FJ060525.2 Pinus taeda isolate 1582 anonymous locus 0_16808_01 genomic sequence.
GenBank	JQ262163	1e-118	JQ262163.1 Pinus radiata isolate 13474 hypothetical protein (0_16808_01) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003635158.1	4e-88	PREDICTED: oligopeptide transporter 3
Refseq	XP_021621313.1	3e-85	oligopeptide transporter 3
Refseq	XP_021623543.1	8e-86	oligopeptide transporter 3-like
Swissprot	O23482	1e-77	OPT3_ARATH; Oligopeptide transporter 3
TrEMBL	A0A2C9VE40	1e-85	A0A2C9VE40_MANES; Uncharacterized protein
TrEMBL	F6GYZ9	8e-87	F6GYZ9_VITVI; Uncharacterized protein
STRING	VIT_00s0259g00140.t01	1e-87	(Vitis vinifera)
STRING	cassava4.1_002314m	1e-84	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	2e-18	AGAMOUS-like 20

Publications ? help Back to Top
Koh S, et al. An oligopeptide transporter gene family in Arabidopsis. Plant Physiol., 2002. 128(1): p. 21-9 [PMID:11788749] Stacey MG,Koh S,Becker J,Stacey G AtOPT3, a member of the oligopeptide transporter family, is essential for embryo development in Arabidopsis. Plant Cell, 2002. 14(11): p. 2799-811 [PMID:12417702] Wintz H, et al. Expression profiles of Arabidopsis thaliana in mineral deficiencies reveal novel transporters involved in metal homeostasis. J. Biol. Chem., 2003. 278(48): p. 47644-53 [PMID:13129917] Stacey MG,Osawa H,Patel A,Gassmann W,Stacey G Expression analyses of Arabidopsis oligopeptide transporters during seed germination, vegetative growth and reproduction. Planta, 2006. 223(2): p. 291-305 [PMID:16151844] Sugiura M,Georgescu MN,Takahashi M A nitrite transporter associated with nitrite uptake by higher plant chloroplasts. Plant Cell Physiol., 2007. 48(7): p. 1022-35 [PMID:17566055] Stacey MG, et al. The Arabidopsis AtOPT3 protein functions in metal homeostasis and movement of iron to developing seeds. Plant Physiol., 2008. 146(2): p. 589-601 [PMID:18083798] Zhai Z, et al. OPT3 Is a Phloem-Specific Iron Transporter That Is Essential for Systemic Iron Signaling and Redistribution of Iron and Cadmium in Arabidopsis. Plant Cell, 2014. 26(5): p. 2249-2264 [PMID:24867923] Mendoza-Cózatl DG, et al. OPT3 is a component of the iron-signaling network between leaves and roots and misregulation of OPT3 leads to an over-accumulation of cadmium in seeds. Mol Plant, 2014. 7(9): p. 1455-1469 [PMID:24880337] Khan MA, et al. Changes in iron availability in Arabidopsis are rapidly sensed in the leaf vasculature and impaired sensing leads to opposite transcriptional programs in leaves and roots. Plant Cell Environ., 2018. 41(10): p. 2263-2276 [PMID:29520929] Steiner HY, et al. An Arabidopsis peptide transporter is a member of a new class of membrane transport proteins. Plant Cell, 1994. 6(9): p. 1289-99 [PMID:7919993] Rentsch D,Hirner B,Schmelzer E,Frommer WB Salt stress-induced proline transporters and salt stress-repressed broad specificity amino acid permeases identified by suppression of a yeast amino acid permease-targeting mutant. Plant Cell, 1996. 8(8): p. 1437-46 [PMID:8776904]