PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00017336-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 314aa MW: 35381 Da PI: 4.9923

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00017336-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	147.6	8.6e-46	34	126	1	93
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 pp aflgpkcalwdc+rpaqg +w+qdycs+fh ++alneg+pg+ pvl+p+gidlkdgllf al ak+ k+ gipecegaat+kspwn + PSME_00017336-RA 34 PPFEAFLGPKCALWDCPRPAQGLDWCQDYCSNFHGMVALNEGSPGMGPVLQPGGIDLKDGLLFTALGAKTVVKSFGIPECEGAATKKSPWNVP 126 66789**************************************************************************************76 PP
2	VOZ	133.2	2.2e-41	125	203	129	207
VOZ 129 lpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdslad 207 +pdy+grgwhesrkqvmke gg+krsyymdpqps++fewhlyeye+n++d++aly lelk+vd+kk++k kv+ d ++ PSME_00017336-RA 125 VPDYNGRGWHESRKQVMKEIGGMKRSYYMDPQPSNQFEWHLYEYEMNNCDSCALYWLELKQVDSKKNTKEKVMGDYVNT 203 7************************************************************************998875 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MNRDFDQNLC LSLDPEVEEE HIPKFQGPCP GIYPPFEAFL GPKCALWDCP RPAQGLDWCQ 60 DYCSNFHGMV ALNEGSPGMG PVLQPGGIDL KDGLLFTALG AKTVVKSFGI PECEGAATKK 120 SPWNVPDYNG RGWHESRKQV MKEIGGMKRS YYMDPQPSNQ FEWHLYEYEM NNCDSCALYW 180 LELKQVDSKK NTKEKVMGDY VNTEKDHIIC EDSRSKVVVE DAYLEPQYSQ TLHLRLVKGN 240 ATCGISNDHQ QDGPYPNVLA PPEHIIPCVE HLKMSVDVFR LLPSNAHNTT RLEGISCLLK 300 ESHNSLQVSK ADED

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT106963	3e-46	BT106963.1 Picea glauca clone GQ03101_E12 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008383671.1	2e-90	transcription factor VOZ1
Refseq	XP_008383672.1	2e-90	transcription factor VOZ1
Swissprot	Q9SGQ0	3e-83	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A0A0KI66	8e-89	A0A0A0KI66_CUCSA; Uncharacterized protein
STRING	XP_008383671.1	6e-90	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-85	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]