PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017261-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 318aa    MW: 37307.7 Da    PI: 7.3615
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017261-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.51e-2465146186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W  +e+++ i++r e+e+++ ++k++k+lWe +s++m+e+gf+rs++qCk+kw+nl +ryk  ++++ ++     ++cp+fd+l+
  PSME_00017261-RA  65 QWGFNETKEFIAIRAELEKDFTQTKRNKTLWELISSRMKEKGFRRSSEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 146
                       6999***********************************************************99999974....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.92258122IPR017877Myb-like domain
CDDcd122033.64E-2564129No hitNo description
PfamPF138372.2E-2265148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MMMGGGGEVE GMGLGVMAAL PLQLTPTVAI SSGDHLGASN NSSLLTNNGG GGLNNSLKKD  60
DRIPQWGFNE TKEFIAIRAE LEKDFTQTKR NKTLWELISS RMKEKGFRRS SEQCKCKWKN  120
LVNRYKGKET SDPENGRQCP FFDELHAIFT ERANTMQRLM LESEGGNNQP KKKLKRFKGL  180
QGEKSSDEFS DDDEDEEEDS EDERIVRNKK RKADRERQRV TAEKSRANSM QEVLQDFFQQ  240
QQRIENQWRE YTERKEQERR LVEQDWRQAV EKLERERILM EQAWREREEQ RRIREDGRAE  300
KRDALLTTLL NRLIRDDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A1e-1162136377DNA binding protein GT-1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1133800.0BT113380.1 Picea glauca clone GQ03406_I12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854232.11e-111trihelix transcription factor GT-3b isoform X2
TrEMBLA0A0D6R6H21e-142A0A0D6R6H2_ARACU; Uncharacterized protein
STRINGERN156991e-111(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.14e-43Trihelix family protein