PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00017162-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | VOZ | ||||||||
Protein Properties | Length: 144aa MW: 16213.8 Da PI: 5.6634 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 173.9 | 7.4e-54 | 34 | 144 | 1 | 111 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp aflgpkcalwdc+rpaqgs w+qdyc +fh ++a neg++g+ pvlrp+gidlkd llfaalsak+ k gipecegaat+kspwna+ PSME_00017162-RA 34 PPPKAFLGPKCALWDCPRPAQGSYWCQDYCRNFHRMVAWNEGPLGMGPVLRPGGIDLKDVLLFAALSAKTVVKYFGIPECEGAATKKSPWNAP 126 89******************************************************************************************* PP VOZ 94 elfdlsllegetirewlf 111 elfdl +l+ e ir lf PSME_00017162-RA 127 ELFDLFVLQEEFIRVALF 144 **************8887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MNRYFDHNLC LSLDPEVEEE HIPKFQGPCP GISPPPKAFL GPKCALWDCP RPAQGSYWCQ 60 DYCRNFHRMV AWNEGPLGMG PVLRPGGIDL KDVLLFAALS AKTVVKYFGI PECEGAATKK 120 SPWNAPELFD LFVLQEEFIR VALF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010657013.1 | 3e-56 | PREDICTED: transcription factor VOZ1 | ||||
Refseq | XP_019079230.1 | 3e-56 | PREDICTED: transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-51 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A2K3NRV0 | 5e-55 | A0A2K3NRV0_TRIPR; Transcription factor VOZ1-like protein | ||||
TrEMBL | A5CA22 | 1e-54 | A5CA22_VITVI; Uncharacterized protein | ||||
TrEMBL | F6H4X2 | 2e-54 | F6H4X2_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0028g02670.t01 | 4e-55 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 5e-54 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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