PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00017033-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 115aa MW: 13204.7 Da PI: 4.2053 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 47.7 | 4.4e-15 | 1 | 55 | 46 | 100 |
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +k+lp e+r da++s+vyeA r+rdPv+G+v+vi++lq+++++l+++l++++ee PSME_00017033-RA 1 MKDLPAEKRYDAVTSMVYEAGERVRDPVRGCVRVINDLQNKVSELESQLVYTQEE 55 57899*********************************************99986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.892 | 1 | 56 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.5E-13 | 2 | 53 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 115 aa Download sequence Send to blast |
MKDLPAEKRY DAVTSMVYEA GERVRDPVRG CVRVINDLQN KVSELESQLV YTQEEVARIT 60 QQNGNLITII TGYHEVSYPN FYIPSLQADH SEDTHTNPPV SDDIDPLELW EPLWT |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LQI9 | 8e-37 | B8LQI9_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28500.1 | 6e-19 | LOB domain-containing protein 11 |