PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016951-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 159aa    MW: 18383.1 Da    PI: 10.2934
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016951-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.1e-1475120148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T+ E+  ++++ + lG++ W+tIa+ ++ gRt++++k++w+++l
  PSME_00016951-RA  75 RGSFTKAEERTILQLDAILGNR-WSTIASQLP-GRTENEIKNFWNSHL 120
                       89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.4142969IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.6E-84076IPR009057Homeodomain-like
SuperFamilySSF466895.26E-1856128IPR009057Homeodomain-like
PROSITE profilePS5129422.56570124IPR017930Myb domain
SMARTSM007176.1E-1374122IPR001005SANT/Myb domain
PfamPF002499.0E-1375120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2477124IPR009057Homeodomain-like
CDDcd001671.99E-977120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MPPYCDSRRM RDSKRNLGFL SILVSSFVLI VMRREEGTSG HATWTALPEL AARLLRCGKT  60
YQLHWTNYLR PDVKRGSFTK AEERTILQLD AILGNRWSTI ASQLPGRTEN EIKNFWNSHL  120
KKRLLKMRLE YPSTHAPIEE VNLSDPRGYE ASALTRHEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-184012426108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516586.11e-44transcription factor MYB41 isoform X2
RefseqXP_017442408.12e-44PREDICTED: myb-related protein Zm38-like
RefseqXP_017442409.12e-44PREDICTED: myb-related protein Zm38-like
RefseqXP_022641765.12e-44transcription factor MYB41 isoform X1
SwissprotQ9M2D99e-43MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A222UAM72e-44A0A222UAM7_GINBI; R2R3MYB15
STRINGXP_007135039.17e-44(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.14e-45myb domain protein 17