PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00016930-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | C3H | ||||||||
Protein Properties | Length: 243aa MW: 27270 Da PI: 8.7698 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.9 | 5.9e-12 | 58 | 82 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG C yG++C+F+H+p PSME_00016930-RA 58 EPDCAYYMRTGLCGYGPNCRFNHPP 82 689********************97 PP | |||||||
2 | zf-CCCH | 37.4 | 4.2e-12 | 100 | 124 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG Ck+G++Ck++H++ PSME_00016930-RA 100 QPECKYYLKTGACKFGATCKYHHPR 124 799********************96 PP | |||||||
3 | zf-CCCH | 25.3 | 2.6e-08 | 145 | 170 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++rt CkyG CkF+H++ PSME_00016930-RA 145 GEKECAYYMRTRCCKYGVHCKFHHPQ 170 6789********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.7E-5 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.695 | 55 | 83 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-9 | 58 | 82 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 58 | 82 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-5 | 61 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.8E-6 | 97 | 124 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.347 | 97 | 125 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 100 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 101 | 125 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 103 | 124 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.258 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.4 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-6 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-6 | 145 | 170 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEYYRQEENW AMHSNKNNVL TFTASTDMKS IEKSMGKMTL KSSVDPVESG SYPERVDEPD 60 CAYYMRTGLC GYGPNCRFNH PPNLKQAIAS KGEFPERVGQ PECKYYLKTG ACKFGATCKY 120 HHPRDRNGLG EQVQMNYLGL PMRQGEKECA YYMRTRCCKY GVHCKFHHPQ PSAIVPVSSY 180 ASSGSPTTPV SSYPPGLLSW PLPRPPYVPG SRLQGSPTYV PVIFSPPQGM IPISGWNNYQ 240 VSP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010252579.1 | 1e-80 | PREDICTED: zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q9SWF9 | 4e-70 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A0D6R411 | 1e-111 | A0A0D6R411_ARACU; Uncharacterized protein | ||||
STRING | XP_010252578.1 | 4e-80 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 3e-65 | zinc finger protein 1 |