PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016918-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 451aa    MW: 50925.6 Da    PI: 9.2997
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016918-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.81.2e-11402448148
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 
                       lp GfrFhPtdeelv++yL  kv ++ +    +i+ vd+++ eP+dLp
  PSME_00016918-RA 402 LPLGFRFHPTDEELVSCYLVLKVLENIFLG-IAIAVVDLNTREPQDLP 448
                       699*********************999766.78**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005450.0099220254IPR003349JmjN domain
PROSITE profilePS511838.533221262IPR003349JmjN domain
PfamPF023752.2E-8222248IPR003349JmjN domain
SuperFamilySSF1019411.7E-12393450IPR003441NAC domain
PROSITE profilePS5100516.248402451IPR003441NAC domain
PfamPF023658.4E-5403427IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MTGPFKQRAR GGLVRAYLEN PDRVKDIASK IIGALPVVGL LYRLIDEEGG VAGECIDFVE  60
LCKKVENRWP PEAPMAFYEF HDHHGKTGNP RFVLMWCWVA AVGAGMVKSD EILLGATRLR  120
VKGKLHLNGQ EKNGLEEFKR NRELLKLQMI RDGKDLNKSN MARSGGDVLA SPGSGRVLSH  180
HKSEKHLQCK ETMDVKADFL NVKADKFGTS EFSWIDDIPS CPVFYPTKEE FQDPSLYLQT  240
IAPTASKYDI SISSKLEVFN LRSYSFHEYK RMENKAFARK FSTTAKLPSK IMKPNEEKCR  300
AKNIVMKYNE HFHSKRAGYH KSLLLYLVAS SESRHDTKLL HHQDTLLDLA GSFFLASPFV  360
DASAHNHHFP GRKRLATKPE GNNKGIYVAY TILKVAHGEE GLPLGFRFHP TDEELVSCYL  420
VLKVLENIFL GIAIAVVDLN TREPQDLPGR L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.22e-14NAC domain containing protein 38