PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016861-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 581aa    MW: 62886.8 Da    PI: 7.1002
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016861-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.89.1e-09201221526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C++f++ G C++Gd C FaHg
  PSME_00016861-RA 201 ACPDFRK-GSCRRGDACEFAHG 221
                       7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.3E-6196222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807197223IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-7201221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5201223IPR000571Zinc finger, CCCH-type
SMARTSM0035611231254IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.085231255IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MPGVSAEECQ ALSLDSFMPG ASFFSESNGY PNAIISSGDF VNGVEFQGPE LLFDQSTPGA  60
EGFNFSNNDA RCFLSKSLSF GSSPSSYRSD DFHHDSFAGS WSEAVKDDAF VSVPMSSGTH  120
VGAMVGSSLA AFHKYLPSNN EDEASWPAVD AYSCDEFRMY EFKVRRCMRG RSHDWTECPF  180
AHPGEKARRR DPRRFHYSGT ACPDFRKGSC RRGDACEFAH GVFECWLHPA RYRTQPCKDG  240
RNCRRRVCFF AHTPEQLRLL PGASVGSRNG FQSKTHEGSN LRHAVSFDGA LSAAGYDGGG  300
SSPVNHFGNG GGYFDGPQTG GSSPRGYLCS KSNLSCTSQF QISSPTSTLV GHAHSPPPLS  360
PPLSPSGSPR DSSANWTYGV SNSSPVGAAN KPLHHKSFNF VNMDTSSVSA SPVVHPSYSL  420
QSPRRHNSIS IPPSHDSRGL SSPVSSLSNE GSSQSPSNGV SDLISSLQSL DLNGAGSSSA  480
TAPSGPSQWL QSHASYAAMH SNCSPRASNL RHCSYSLPST PTKSRWEKNW DSEFFAEEEP  540
LQRVESGREL RAKIYGRLSR ENNDNTNVES PDLGWVNELI K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376481.11e-118zinc finger CCCH domain-containing protein 30-like
RefseqXP_024376584.11e-118zinc finger CCCH domain-containing protein 30-like
TrEMBLB8LMK40.0B8LMK4_PICSI; Uncharacterized protein
STRINGPP1S297_45V6.11e-117(Physcomitrella patens)
STRINGPP1S297_51V6.11e-117(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-77C3H family protein