PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016607-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 771aa    MW: 88654.7 Da    PI: 9.3242
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016607-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.55.6e-12534573446
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT++E + l+++ + +G++ Wk+Ia+ +g  ++++++k++w+ 
  PSME_00016607-RA 534 WTKDEIDTLKRLQAVHGNN-WKKIAEFLG--KSRYHVKDKWRR 573
                       *****************99.********8..9*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.54456528IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-4458521IPR009057Homeodomain-like
SMARTSM007171.1E-8530577IPR001005SANT/Myb domain
SuperFamilySSF466894.32E-10533592IPR009057Homeodomain-like
PROSITE profilePS5129411.683534579IPR017930Myb domain
CDDcd001672.55E-6534575No hitNo description
PfamPF139211.4E-10534592No hitNo description
Gene3DG3DSA:1.10.10.606.4E-10534584IPR009057Homeodomain-like
PROSITE profilePS500906.98576645IPR017877Myb-like domain
SMARTSM007172.6580647IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-6585645IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MQTSLLWTSL GPPALAEQIT GKTMIANGAE GFQDDELHGS KEKKKGKTNG DPLSENLQVM  60
NEIQEKPSIK KKKKKKKTDG DEAKTEEEMS EIMVGFHEDG IAEKHKKKLK KTDGDEAKTE  120
EEISEKRDGF HEDGIAEKHK KKKKKTDGDD AKTEEEISEE RDGFHEDGIA EKHKKKKKKT  180
DGDEAKREED ISEKRDGFHE DGIVEKHKKK KEKKKSGEVE IEVKLEIVKQ EEITSIPDLE  240
IREKAPKKKK KKRAEGNGIE VPENLHEGIA EGTSKEEHNT EKSHKKKKKK KEKRAEGNGI  300
VKVENLEEGI EDVIVKEEDN TEKSPMKTKK NSEGEDFNNA EEKEKRIKKM DKSNEREGYD  360
IVEFKEKKSS EGEDYDKVEE KEKRTKKRKR GESVSENNNC GESSPAERSP PNKKQRKVTF  420
SDQVEVFLIE DKKNVEKSKD GRISIAASGD DSNLVWGKRF SKAEDQAIRN AVSAYIQEHG  480
FEEKKGIHMI LNGIKNPEVR NCWKEIAAAL PWRPLKSVYL RTHILYERSE EPGWTKDEID  540
TLKRLQAVHG NNWKKIAEFL GKSRYHVKDK WRRIKRAGLN SGHWSQDEYQ RLFDLVNQDL  600
QLKSLQKEEK LSRNVLRDNI NWEAIADRMG TRDHVYCCKK WYYGLASPMV QNGEWENADD  660
ITLLRRYGID QFWLTTDLWQ QHRDTGSLSS SRATVNIYGL PVNTSGQLLF RLRKAAIGLR  720
KPPLQLRQQE QTSPPYGQQE QRSEQFTGRL LQDPGSPFGI RAAQVKNPGI G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284290KKKKKKK
2285293KKKKKKEKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1026750.0BT102675.1 Picea glauca clone GQ02010_N21 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.12e-66MYB_related family protein