PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00016286-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 358aa MW: 39982.9 Da PI: 6.3992

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00016286-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	410.4	3.4e-126	135	351	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgpkcalwdc+rpaqg++w+qdycs fh t+a neg+pg++pvlrp+gidlkdg+lfaalsak+q k vgip cegaat+kspwna PSME_00016286-RA 135 PPPAAFLGPKCALWDCSRPAQGTKWCQDYCSDFHMTFASNEGAPGMRPVLRPGGIDLKDGPLFAALSAKTQEKAVGIPGCEGAATSKSPWNAY 227 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege+ rewlffdkpr afesgnrkqrslpdysgrgwhesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+alyrle PSME_00016286-RA 228 ELFDMYVLEGESRREWLFFDKPRWAFESGNRKQRSLPDYSGRGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDACALYRLE 320 ***************************************************************************************** PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+v +kk++kgkv d+l+dlq++lg+l+a PSME_00016286-RA 321 LKMVCSKKNTKGKVGGDPLVDLQHQLGNLSA 351 **************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.70.330	2.7E-6	10	50	IPR012677	Nucleotide-binding alpha-beta plait domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MSSSCTCGRG GGLVVKNYIA VSEAVEGEAE KEYWAKLREG QDKRRQFAGN SRGSYPQTSV 60 QLPANIEHQE NNNYVQTSEQ LPPNLVEGLE VTSRHKGGQI NFHQDYIPAA QPIFTLTGEE 120 ETSPVFNGPQ PGLCPPPAAF LGPKCALWDC SRPAQGTKWC QDYCSDFHMT FASNEGAPGM 180 RPVLRPGGID LKDGPLFAAL SAKTQEKAVG IPGCEGAATS KSPWNAYELF DMYVLEGESR 240 REWLFFDKPR WAFESGNRKQ RSLPDYSGRG WHESRKQVIK DFGGLKRSYY MDPQPSTQFE 300 WHLYEYEIND CDACALYRLE LKMVCSKKNT KGKVGGDPLV DLQHQLGNLS AEFSWVAK

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MSSSCTCGRG GGLVVKNYIA VSEAVEGEAE KEYWAKLREG QDKRRQFAGN SRGSYPQTSV  60
QLPANIEHQE NNNYVQTSEQ LPPNLVEGLE VTSRHKGGQI NFHQDYIPAA QPIFTLTGEE  120
ETSPVFNGPQ PGLCPPPAAF LGPKCALWDC SRPAQGTKWC QDYCSDFHMT FASNEGAPGM  180
RPVLRPGGID LKDGPLFAAL SAKTQEKAVG IPGCEGAATS KSPWNAYELF DMYVLEGESR  240
REWLFFDKPR WAFESGNRKQ RSLPDYSGRG WHESRKQVIK DFGGLKRSYY MDPQPSTQFE  300
WHLYEYEIND CDACALYRLE LKMVCSKKNT KGKVGGDPLV DLQHQLGNLS AEFSWVAK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260370.1	1e-133	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-122	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1U8A0G4	1e-132	A0A1U8A0G4_NELNU; transcription factor VOZ1
STRING	XP_010260370.1	1e-133	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-124	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]