PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00015983-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | VOZ | ||||||||
Protein Properties | Length: 239aa MW: 26264.5 Da PI: 4.6427 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 116.8 | 2.3e-36 | 110 | 179 | 1 | 70 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakv 70 ppp aflgpkcalwdc+rpaqgs+w+qdycs+fh ++alneg+pg++p+lrp+gidlkdgllfaal ak+ PSME_00015983-RA 110 PPPKAFLGPKCALWDCPRPAQGSDWCQDYCSNFHGMVALNEGPPGIRPILRPGGIDLKDGLLFAALGAKT 179 89******************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MSNSSSDSEA SLCSSDLSCD MWRLLQLHEE EDDATNILAA PYNSNLQLNE NTLEAANPSS 60 FQEAIPPNEM RKDFYVDHAN AEAQNIDGTN PEVEEEHIPK FQGPCPGISP PPKAFLGPKC 120 ALWDCPRPAQ GSDWCQDYCS NFHGMVALNE GPPGIRPILR PGGIDLKDGL LFAALGAKTM 180 RYLTCLFFKG KLLESGSFLK TNKSFPVLMY GTGSNSHHIS KLDFGDPDRK HELPCGYVL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015576892.1 | 1e-47 | transcription factor VOZ1 isoform X2 | ||||
Swissprot | Q9SGQ0 | 3e-42 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A0B2RK91 | 7e-46 | A0A0B2RK91_GLYSO; Transcription factor VOZ1 isoform A | ||||
TrEMBL | K7LHU8 | 7e-46 | K7LHU8_SOYBN; Uncharacterized protein | ||||
TrEMBL | K7LHV1 | 5e-46 | K7LHV1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G07940.3 | 1e-46 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-31 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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