PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00015866-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GATA
Protein Properties Length: 330aa    MW: 36119.2 Da    PI: 5.4903
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00015866-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.41.5e-16224257134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C++C +  Tp+WR gp g+ktLCnaCG+++++ +
  PSME_00015866-RA 224 CTHCLSQRTPQWRLGPLGPKTLCNACGVRFKSGR 257
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.106.5E-13217256IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.398218254IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-12218268IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-15219281No hitNo description
CDDcd002022.16E-13223280No hitNo description
PfamPF003201.5E-14224257IPR000679Zinc finger, GATA-type
PROSITE patternPS003440224249IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MLSGMGMDIA RNNSSFGEFP GLESPIKWGE AAKSLDLSSI GDVFRIEDLS EFSNEDIAGP  60
IPSGSLSSSL SSPGSSQNMA KHTICTSFLN EEDFICPPYE EGIGLEWLSD FVEDSFAATG  120
SSNSGSMAEF SDGIVNDSGE KKQSPTDEAI IPQVRPIKET PRSQRAVPGR ARSKRPRISG  180
ATIRGWSTSE DYALQQEGGT KAVTDAGVTN NYQTSATQQQ PRRCTHCLSQ RTPQWRLGPL  240
GPKTLCNACG VRFKSGRLFP EYRPAKSPTF IRYIHSNSHK KVLEMRNQED NDLESLVFDP  300
QLSDTKQQEQ GLLKVKIKLT GLDNLSSQSN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0875700.0EF087570.1 Picea sitchensis clone WS02751_L09 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGcassava4.1_013059m6e-46(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.14e-43GATA transcription factor 7