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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00014706-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 244aa MW: 27923.2 Da PI: 10.4937 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 88.3 | 4e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien +nrqvtfskRrng+lKKA+ELSvLCda ++ifs++gklye++
PSME_00014706-RA 9 KRIENATNRQVTFSKRRNGLLKKAYELSVLCDAPMGLMIFSPRGKLYEFA 58
79***********************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50066 | 30.333 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 2.7E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.0E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 7.96E-35 | 3 | 60 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 7.59E-26 | 3 | 61 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 6.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.0E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.0E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 244 aa Download sequence Send to blast |
MLRGKTLMKR IENATNRQVT FSKRRNGLLK KAYELSVLCD APMGLMIFSP RGKLYEFANP 60 RIAIHVVCVG EMIPSDSKSR EASKCQGITG VETPLKTTQA MQSLPFFPCK VKFEDPLPKL 120 NEKHDTFNGK YRQYGAVLNH QETTNGHFFQ SITKKKKLDN TYSSAPSEWL SGRHPGELEV 180 ERQRKLTRGK VVEDQLVCPK FEEIQRDNLP RYKAGKDHVV KATIKKKSKS SKYRKINNNT 240 DFQA |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | BT114588 | 0.0 | BT114588.1 Picea glauca clone GQ03517_I06 mRNA sequence. | |||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G45660.1 | 5e-30 | AGAMOUS-like 20 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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