PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014491-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 481aa    MW: 53715.9 Da    PI: 6.609
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014491-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.41e-51361641129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk.rknratksgyWkatgkdkev 92 
                       lppGfrFhPtdeelv++yL++k+ +++++  ++i+e+d++k+ePwd+ +++k++ekewyfF  r++ky++g+ r+nrat++gyWk+tg+d+ev
  PSME_00014491-RA  36 LPPGFRFHPTDEELVSYYLTQKCLDSTFSG-SAIAEADLTKCEPWDFAARAKTGEKEWYFFGLRERKYPRGRfRTNRATAAGYWKTTGQDREV 127
                       79*************************999.88**************999999****************9776******************** PP

               NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        s+++++vg+kktLvfy grapkgekt+Wvmheyrle
  PSME_00014491-RA 128 SSQSSAVVGMKKTLVFYMGRAPKGEKTNWVMHEYRLE 164
                       ***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5631188IPR003441NAC domain
PROSITE profilePS5100554.95736188IPR003441NAC domain
PfamPF023651.2E-2737163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MELPLSMHSR EDIELGMESI LNRNNDAHDA KAHSQLPPGF RFHPTDEELV SYYLTQKCLD  60
STFSGSAIAE ADLTKCEPWD FAARAKTGEK EWYFFGLRER KYPRGRFRTN RATAAGYWKT  120
TGQDREVSSQ SSAVVGMKKT LVFYMGRAPK GEKTNWVMHE YRLEENFSHN PQCQNCKDEW  180
VVSRIFEKSA RGKKSSIAMM RRNSFLDLPG SQSLPSLLES PCKTTAANDL ETRSTESESG  240
TSAKAHDPVP CFSTPMEHKA NLTGHHLHQF QHGSSSNYPD FYDELSEKAK PLEQSDPRIH  300
MNMMPGAALF SVSNIRRDQT FLNMPAAALD QEPGIQYLPG SPLPTLCNLS NSSNLGFSTD  360
AYFSALHFSN SFSMASDQSA GSRTGPFSSS FVQHKTLNNN ITVGANNCVN RFQWANDRIS  420
NKISGQPIQE AVGVTCLSAN ITDQMASVVC NRLDRPFDQL DSSVTPPGDF DSLWNITEHL  480
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-492919410171NO APICAL MERISTEM PROTEIN
1ut4_B2e-492919410171NO APICAL MERISTEM PROTEIN
1ut7_A2e-492919410171NO APICAL MERISTEM PROTEIN
1ut7_B2e-492919410171NO APICAL MERISTEM PROTEIN
3swm_A3e-492919413174NAC domain-containing protein 19
3swm_B3e-492919413174NAC domain-containing protein 19
3swm_C3e-492919413174NAC domain-containing protein 19
3swm_D3e-492919413174NAC domain-containing protein 19
3swp_A3e-492919413174NAC domain-containing protein 19
3swp_B3e-492919413174NAC domain-containing protein 19
3swp_C3e-492919413174NAC domain-containing protein 19
3swp_D3e-492919413174NAC domain-containing protein 19
4dul_A2e-492919410171NAC domain-containing protein 19
4dul_B2e-492919410171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019707154.14e-83protein CUP-SHAPED COTYLEDON 2 isoform X2
TrEMBLA0A482EV391e-133A0A482EV39_9SPER; NAC4 domain protein
STRINGERN065712e-80(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.17e-75NAC family protein