PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014399-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 476aa    MW: 53285.5 Da    PI: 6.3812
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014399-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.83e-55241521129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       +ppGfrFhPtdeelv++yL+kk+ ++++++ +vi+e+d++k+ePwdLp k+k +ekewyfF  rd+ky+tg r+nrat++gyWk+tgkd+ev 
  PSME_00014399-RA  24 MPPGFRFHPTDEELVTYYLTKKILDSNFSA-RVITEADLNKCEPWDLPGKAKMGEKEWYFFNLRDRKYPTGLRTNRATQAGYWKTTGKDREVS 115
                       79***************************9.99***************99999***************************************9 PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                       ++ +++lvg+kktLvfykgrapkgek++W+mheyrle
  PSME_00014399-RA 116 NSrSSALVGMKKTLVFYKGRAPKGEKSNWIMHEYRLE 152
                       9856778****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-6317176IPR003441NAC domain
PROSITE profilePS5100560.55724176IPR003441NAC domain
PfamPF023653.1E-2825151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MESGMESTLY PMNNAQETEG EEHMPPGFRF HPTDEELVTY YLTKKILDSN FSARVITEAD  60
LNKCEPWDLP GKAKMGEKEW YFFNLRDRKY PTGLRTNRAT QAGYWKTTGK DREVSNSRSS  120
ALVGMKKTLV FYKGRAPKGE KSNWIMHEYR LEGKFSYHRL PRNCNDDWVV CRIFQKGASG  180
KRSSLGLINR NAYFDLPGSP SLPSLLESPY NTTAANDQET GSIESESGTS AKGHDVSYFS  240
TSMEPRANFH KFQRGNSSSY PDSSDQLSEM ARQMKHSSYM QNLMTNDPRI HMNMNMMPAA  300
ALFSLSNMKR EQTSSILEQQ MGIQQLPAGL PPPLLFNPLP FPPNPLSMAI PAYAYSSTLH  360
SSNSVSKALV SPSEGSSVDP SSSSGLHHKS LDNDNTTGAN NSVRSFRWAD DGLSQKVLGQ  420
PIQEASEPQC NLSTNMIDEM TSVVCNQLDQ PLDQLDSSTA PPVDFDSLWN IRDHLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-532418217171NO APICAL MERISTEM PROTEIN
1ut4_B6e-532418217171NO APICAL MERISTEM PROTEIN
1ut7_A6e-532418217171NO APICAL MERISTEM PROTEIN
1ut7_B6e-532418217171NO APICAL MERISTEM PROTEIN
3swm_A7e-532418220174NAC domain-containing protein 19
3swm_B7e-532418220174NAC domain-containing protein 19
3swm_C7e-532418220174NAC domain-containing protein 19
3swm_D7e-532418220174NAC domain-containing protein 19
3swp_A7e-532418220174NAC domain-containing protein 19
3swp_B7e-532418220174NAC domain-containing protein 19
3swp_C7e-532418220174NAC domain-containing protein 19
3swp_D7e-532418220174NAC domain-containing protein 19
4dul_A6e-532418217171NAC domain-containing protein 19
4dul_B6e-532418217171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482EV391e-164A0A482EV39_9SPER; NAC4 domain protein
STRINGXP_010260303.16e-97(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.11e-91NAC family protein