PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00013889-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | HB-other | ||||||||
Protein Properties | Length: 102aa MW: 11864.8 Da PI: 10.3539 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.5 | 4.7e-08 | 10 | 50 | 13 | 53 |
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 e+ ++F+ + ps + L+k+l+L+ + V +WF+N R+ PSME_00013889-RA 10 ERFCQVFADKELPSMPYKLVLSKQLDLPYQHVHMWFKNARY 50 566689999*******************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.588 | 1 | 55 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.97E-7 | 5 | 62 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.1E-7 | 7 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.4E-5 | 10 | 50 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MSKLPTNAVE RFCQVFADKE LPSMPYKLVL SKQLDLPYQH VHMWFKNARY MSLKKKKLNR 60 LKESAAPVIS TNTRRLKLES SNSTPQIKET DDASNSYLTK ME |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 2e-14 | pathogenesis related homeodomain protein A |