PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00013145-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TCP
Protein Properties Length: 474aa    MW: 52611.9 Da    PI: 4.2465
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00013145-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP76.29.7e-2430104366
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........s 66 
                       +k+ +++++hTkv+gR RRv ++ + a r+F+L +  G+++d++ti+WLl++ kpai  +t+t           +
  PSME_00013145-RA  30 VKRPSTKDRHTKVNGRARRVKIPTSSAVRIFQLMRGFGHKSDGQTIQWLLNKVKPAIMVATSTcvvptlplpivG 104
                       6999**********************************************************9665555555550 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-183493IPR005333Transcription factor, TCP
PROSITE profilePS5136918.7173589IPR017887Transcription factor TCP subgroup
SuperFamilySSF634912.2E-6253295IPR003103BAG domain
PfamPF021791.1E-5264295IPR003103BAG domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051087Molecular Functionchaperone binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MSSEVQNQSK ERLFLEGPQS NDPTRNALVV KRPSTKDRHT KVNGRARRVK IPTSSAVRIF  60
QLMRGFGHKS DGQTIQWLLN KVKPAIMVAT STCVVPTLPL PIVGSSTGTV PALPVSILGS  120
DDRVEIDMRA PFESVNDVVS LFAERAVGDK ITEKRPEIPE EKSKAEEVSL GLDGKSIFLV  180
GLSYGNWARN VSFLEFMIIS EKCLLVLLGP YSPFVSGSLV GHRYAANYPY CVYSLASQCI  240
SICCFSVSLV NMAMHKGKRV AENDLVDLIE MLMRQLVRLD GIIVDGDAKL QRRMQFWDAS  300
APGTYPLNPA CEDFVRFSPV SVSHLVGSIP SGCSVAVSLS LRAFTFGEWS KTGWRTVLGI  360
VCFFDGQLCF ASFVVQLRTL EVSFIFLSSR LHFASFIVRL RTLKDDDDVH DVRGEDDDDV  420
HDVDGEDDDD DVHDGDDEDD DDDDDEGYDD DDEDDDDNVH DVDGDDDDED EDDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1118001e-40BT111800.1 Picea glauca clone GQ03303_M20 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.16e-24TCP family protein