PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00012898-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 84aa MW: 9159.58 Da PI: 9.7177 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 62.8 | 8.9e-20 | 30 | 77 | 2 | 49 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal 49 CaaCk+ r+kC+++Cvlapyfp+++p+kf v+++FG+++++kll+ PSME_00012898-RA 30 CAACKINRKKCSDKCVLAPYFPQDDPQKFLSVNRVFGNKHLIKLLQVC 77 ********************************************9965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.482 | 28 | 84 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-18 | 30 | 78 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MSESKGAKSG GVVQMSDTSA SKRSDVASTC AACKINRKKC SDKCVLAPYF PQDDPQKFLS 60 VNRVFGNKHL IKLLQVCDSR ATYI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960340.1 | 1e-17 | LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 9e-17 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | B8LP64 | 2e-20 | B8LP64_PICSI; Uncharacterized protein | ||||
STRING | Si024430m | 5e-17 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 4e-19 | LOB domain-containing protein 11 |