PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00012478-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 291aa    MW: 33321.6 Da    PI: 7.4051
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00012478-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.6e-11106153655
                       HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        ++Er+RR+++++ f++Lr+llP+       +K + ++ + +Av Y+++Lq
  PSME_00012478-RA 106 IIIERQRRKEMKTLFSTLRSLLPEeH---LRRKRTVSDQVLEAVTYVRHLQ 153
                       689*********************65...9999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.687100152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-10102157No hitNo description
Gene3DG3DSA:4.10.280.101.1E-10102168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-12103169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-8105153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-6106158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
VSKMSIPSWL HSQFLSCNDL MNNFNVESVS SNSNPVLSTQ DPFLSSYNTD HHADMFNFVD  60
GRNSGTPAGL WNRPVLLPFC NSSFPTDGQY RNRLPVVAPL DKKNPIIIER QRRKEMKTLF  120
STLRSLLPEE HLRRKRTVSD QVLEAVTYVR HLQQNVQDLS AEREKMKAVS DQNAKVSMEK  180
SVDKTPPLGE SDREYPALKI NSVSSGVQIW TNSLEHEIVY SDILLALEEE GLEVMSAASS  240
TINNRVYHTI HAKVFEHNIF NVETLYHKLW HLIRTKYQNL NEDLQNAKAR A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNH52e-88B8LNH5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.13e-21bHLH family protein