PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00011820-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 274aa MW: 30531.7 Da PI: 5.6462

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00011820-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	217	4.8e-67	149	274	1	126
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp aflgpkcalwdc+rpaqgs+w+qdycs+fh ++ lneg++g+ p+lrp+ idlkdgllfa+l ak+ k+ gipecegaat+kspwna+ PSME_00011820-RA 149 PPPKAFLGPKCALWDCPRPAQGSDWCQDYCSNFHGMVVLNEGPLGMGPILRPGAIDLKDGLLFATLGAKTVVKSFGIPECEGAATKKSPWNAP 241 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkq 126 elfdl +l+ge i ewlffdkprr fesgnrkq PSME_00011820-RA 242 ELFDLFVLQGEVIGEWLFFDKPRRDFESGNRKQ 274 ******************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MMGKRSKSMP KSTTHQLFKT KAKNRVHQFP WECNAKVHEE SPTTSMLEAS LCSSNLSCDM 60 WRLLQLHEEE DDAISILAAP YSSKIQLNEN TLEAANPSSS QEAIPPNEMR KDFYVDHANA 120 EAQNINGTNP EVEEEHIPKF QGPCPRISPP PKAFLGPKCA LWDCPRPAQG SDWCQDYCSN 180 FHGMVVLNEG PLGMGPILRP GAIDLKDGLL FATLGAKTVV KSFGIPECEG AATKKSPWNA 240 PELFDLFVLQ GEVIGEWLFF DKPRRDFESG NRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015576892.1	1e-89	transcription factor VOZ1 isoform X2
Swissprot	Q9SGQ0	4e-82	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A445I667	7e-86	A0A445I667_GLYSO; Transcription factor VOZ1 isoform A
TrEMBL	I1M050	7e-86	I1M050_SOYBN; Uncharacterized protein
STRING	evm.model.supercontig_7.6	5e-87	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-84	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]