PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00011220-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 310aa    MW: 33981.8 Da    PI: 8.1032
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00011220-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.12.3e-13220278164
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykki 64 
                       rWt+++v+++i+++ ++++++ ++     +W++vs+ m+++gf++sp+qC +k+  l kr +k+
  PSME_00011220-RA 220 RWTDHKVRHMIQVVCNVDKEFTKE-----KWKSVSELMMQKGFSVSPQQCLDKFHALVKRPRKV 278
                       8******************99876.....******************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF511262.44E-2772203IPR011050Pectin lyase fold/virulence factor
Gene3DG3DSA:2.160.20.105.2E-1972159IPR012334Pectin lyase fold
PfamPF002952.4E-1377162IPR000743Glycoside hydrolase, family 28
Gene3DG3DSA:2.160.20.101.9E-10160203IPR012334Pectin lyase fold
PfamPF138376.6E-11218278No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004650Molecular Functionpolygalacturonase activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
RSEALIQEIS KAIPGSNDLS FKSQQFKPWL VCGSSIGLTG EILNTTAFDA CSHLHVVCFL  60
APHSGEWAGK PAWTAACTSS QASIVYVPKG KYLLNPLAFT GPCKNNNMTF QLVGGLFAST  120
NNNLYSGYWM QFKTVNMLTF EGEGYLDGQG ASWWSQNCAN NDAKGLKIQA PGDSPNTDGI  180
HVEQSSNMKI ISVTIGTGNL DCLVAEMVDL QKHSEGPRMR WTDHKVRHMI QVVCNVDKEF  240
TKEKWKSVSE LMMQKGFSVS PQQCLDKFHA LVKRPRKVVR AVCSLSEAER GRERPSGAVG  300
EGMGGIELTV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1181464e-42BT118146.1 Picea glauca clone GQ04002_O18 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.18e-10