PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00011199-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Trihelix

Protein Properties

Length: 721aa MW: 81627 Da PI: 7.6752

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00011199-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.1	3.3e-30	146	230	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laL+++r+ m++++r+++ k+plWe vs+k+ e g++rs+k+Ckek+en++k+ykk+k+g+++r++++s +++f++lea PSME_00011199-RA 146 RWPREETLALLRIRSGMDSNFRDSNIKGPLWENVSRKLGELGYSRSAKKCKEKFENISKYYKKTKDGRIGRQDGKS--YRFFSELEA 230 8*******************************************************************866665..****985 PP
2	trihelix	99.6	2.6e-31	428	512	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r++m+ ++++ k+ +Wee+s+ m++ gf+rs+k+Ckekwen+nk+++k+++++kkr +++ +tcpy+dql+ PSME_00011199-RA 428 RWPKPEVQALIRLRSNMDVKFQEPGFKGLHWEEISSGMARLGFHRSAKRCKEKWENINKYFRKTRDNMKKR-PQNAKTCPYYDQLN 512 8*******************************************************************8.99999*****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.018	143	205	IPR001005	SANT/Myb domain
Pfam	PF13837	7.2E-20	145	231	No hit	No description
PROSITE profile	PS50090	6.667	145	203	IPR017877	Myb-like domain
CDD	cd12203	3.05E-26	145	210	No hit	No description
PROSITE profile	PS50090	7.77	421	485	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.2E-5	423	484	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-5	425	487	IPR001005	SANT/Myb domain
CDD	cd12203	3.71E-26	427	492	No hit	No description
Pfam	PF13837	4.0E-21	427	512	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MQSGHGQYGG VPGIQQFMVE GCSSPHGLFA ALSQEQINHN TNHPLQINQS QAQAQAQAQA 60 QAQAHQQAGF QNQVLQQQHQ LGLQGPESSE QNRSRDLNSN KAYGSLREAT AGGHLQGRHQ 120 VNPAQNLTDD DGVGDEGERG GGGVNRWPRE ETLALLRIRS GMDSNFRDSN IKGPLWENVS 180 RKLGELGYSR SAKKCKEKFE NISKYYKKTK DGRIGRQDGK SYRFFSELEA LYSNSHGGSR 240 SSIENPNRTA SVQEVTDIGG PEKASNAATL NLSSDNTSED DQYNNNRQNP MSHKTHEQVN 300 KKKRKRKHLA SVTTFFESLV KQVMGHQEEL HRKFLEALER REQERLNREE TWKRQEMARL 360 NRETELRAQE HALASTREAA IVAFLQKITG QNLNLPTSAT PLSVPTETQQ DQEKLATDEV 420 MADLNSKRWP KPEVQALIRL RSNMDVKFQE PGFKGLHWEE ISSGMARLGF HRSAKRCKEK 480 WENINKYFRK TRDNMKKRPQ NAKTCPYYDQ LNLLYSNNPK SNKMEGHSSD DQADPDQDNN 540 NDNNNGDDDE HDQIRPSDSE LLAAMIHGDQ AGGLPLSKNN AVTTTVQDHL FQDGRPIVQA 600 QKRFKTKQHL PAGIQASNPL RIVSESGPKL NPFEDTFSGN IKKGTNMDSL VKEMLEMQQH 660 QKFLDAFERR EHEQEQQQSM SRDERQQHQH PDETTQDDRS QSALMALVHK LTVNAADYST 720 G

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MQSGHGQYGG VPGIQQFMVE GCSSPHGLFA ALSQEQINHN TNHPLQINQS QAQAQAQAQA  60
QAQAHQQAGF QNQVLQQQHQ LGLQGPESSE QNRSRDLNSN KAYGSLREAT AGGHLQGRHQ  120
VNPAQNLTDD DGVGDEGERG GGGVNRWPRE ETLALLRIRS GMDSNFRDSN IKGPLWENVS  180
RKLGELGYSR SAKKCKEKFE NISKYYKKTK DGRIGRQDGK SYRFFSELEA LYSNSHGGSR  240
SSIENPNRTA SVQEVTDIGG PEKASNAATL NLSSDNTSED DQYNNNRQNP MSHKTHEQVN  300
KKKRKRKHLA SVTTFFESLV KQVMGHQEEL HRKFLEALER REQERLNREE TWKRQEMARL  360
NRETELRAQE HALASTREAA IVAFLQKITG QNLNLPTSAT PLSVPTETQQ DQEKLATDEV  420
MADLNSKRWP KPEVQALIRL RSNMDVKFQE PGFKGLHWEE ISSGMARLGF HRSAKRCKEK  480
WENINKYFRK TRDNMKKRPQ NAKTCPYYDQ LNLLYSNNPK SNKMEGHSSD DQADPDQDNN  540
NDNNNGDDDE HDQIRPSDSE LLAAMIHGDQ AGGLPLSKNN AVTTTVQDHL FQDGRPIVQA  600
QKRFKTKQHL PAGIQASNPL RIVSESGPKL NPFEDTFSGN IKKGTNMDSL VKEMLEMQQH  660
QKFLDAFERR EHEQEQQQSM SRDERQQHQH PDETTQDDRS QSALMALVHK LTVNAADYST  720
G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	300	306	KKKRKRK
2	301	306	KKRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT116679	0.0	BT116679.1 Picea glauca clone GQ03804_H24 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024359363.1	1e-135	trihelix transcription factor GTL1-like
Swissprot	Q39117	1e-101	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A0C9S5C5	0.0	A0A0C9S5C5_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_12946_2942 transcribed RNA sequence
STRING	PP1S85_58V6.1	1e-134	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-89	Trihelix family protein