PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00010378-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 24829.5 Da PI: 7.0999 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 50.5 | 5.9e-16 | 2 | 56 | 47 | 101 |
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +++p +r +a+ +++yeA+ar+rdPvyG+vg+i lq+q+++l++ela ++++l PSME_00010378-RA 2 RNIPVPKRCEAVVTICYEAQARLRDPVYGCVGHIYYLQHQVKSLENELANVQAQL 56 6778899*******************************************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.619 | 1 | 56 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-14 | 2 | 53 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MRNIPVPKRC EAVVTICYEA QARLRDPVYG CVGHIYYLQH QVKSLENELA NVQAQLATRL 60 QAAASLQQAH HHGHSESCLS SAASTGYAGT SSSPYDHHHQ LQDHAAPLSM SFHVPAGASS 120 SAVAAATHAH VNPYTDRLKE ESVPATAFHA LTYTHHLHNI SPLQIEPASF CSTVQQMQDA 180 YLRNRNNIQL MDQQHNDSDQ TGGGELQALA HELLRRNHGA KPHSTSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 2e-17 | LOB domain-containing protein 31 |