PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00009983-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 303aa MW: 35168.4 Da PI: 6.1827

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00009983-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.4	7.8e-42	23	149	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pG+rF Pt+eelv +yLkk v+g+ l+++++i+++d+y+++Pw+Lp ++ +e++w+fF++r +++ +r+nr+t gyWkatg+d++v PSME_00009983-RA 23 FPGYRFYPTEEELVGFYLKKTVHGRLrqLNFDRIIPTLDLYQYDPWELPGLANVGERQWFFFVPRYHTK--CSRQNRMTVLGYWKATGSDRAV 113 59******************998755777788***********8888899****98765..68**************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +g kktLvfykg++++g+ktdW+m+eyrl PSME_00009983-RA 114 RNELLQCIGHKKTLVFYKGKHSRGQKTDWIMNEYRL 149 99999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.2E-44	20	171	IPR003441	NAC domain
PROSITE profile	PS51005	48.188	22	171	IPR003441	NAC domain
Pfam	PF02365	3.7E-23	24	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MAILPETYNT DDVLPRQREL MSFPGYRFYP TEEELVGFYL KKTVHGRLRQ LNFDRIIPTL 60 DLYQYDPWEL PGLANVGERQ WFFFVPRYHT KCSRQNRMTV LGYWKATGSD RAVRNELLQC 120 IGHKKTLVFY KGKHSRGQKT DWIMNEYRLP DMMSSAAKKK MDLVLCRIYR KAVTQKSMEQ 180 LVKPDDIERE KPVVTEMSIE QGFADEDDKE EPVISGDEGK SDSILDTVIC RSNPLTEANA 240 VPLHHGIGER KEEASIFDEL IPIICCEEIM ELKTPKTCYP QQLSVDYVFD HPMGRPCSIL 300 STP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-37	24	171	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-37	24	171	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-37	24	171	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-37	24	171	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-37	24	171	22	168	NAC domain-containing protein 19
3swm_B	1e-37	24	171	22	168	NAC domain-containing protein 19
3swm_C	1e-37	24	171	22	168	NAC domain-containing protein 19
3swm_D	1e-37	24	171	22	168	NAC domain-containing protein 19
3swp_A	1e-37	24	171	22	168	NAC domain-containing protein 19
3swp_B	1e-37	24	171	22	168	NAC domain-containing protein 19
3swp_C	1e-37	24	171	22	168	NAC domain-containing protein 19
3swp_D	1e-37	24	171	22	168	NAC domain-containing protein 19
4dul_A	1e-37	24	171	19	165	NAC domain-containing protein 19
4dul_B	1e-37	24	171	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791987.1	1e-59	NAC domain-containing protein 22-like
Swissprot	Q10S65	2e-53	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A075M5N5	4e-89	A0A075M5N5_9SPER; NAC domain protein
STRING	Pavir.Db00028.1.p	3e-60	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	9e-53	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]