PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00009982-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 35266.4 Da PI: 5.4748 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 123.6 | 1.7e-38 | 19 | 142 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 pGfrFhPt+eel+ +yLkk++e +l+++i+++d+y++ePw+Lp ++ ee++w+fF++r +k+ r+nr tksgyWkatg+d++ PSME_00009982-RA 19 PGFRFHPTEEELLGFYLKKRIELGAgypWNLDKIIPTIDLYQYEPWELPgLVHDVEERQWFFFVPRYQKKC--ARPNRLTKSGYWKATGSDRN 109 9********************9887777888889***************556666889********99865..7******************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + +glkktLvfy + g++tdW+m+eyr+ PSME_00009982-RA 110 IRNDLFHCIGLKKTLVFY----NLGKRTDWIMNEYRM 142 ***98999**********....7899*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-40 | 16 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.281 | 17 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-23 | 19 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MPEKICKDGV VQVELMDFPG FRFHPTEEEL LGFYLKKRIE LGAGYPWNLD KIIPTIDLYQ 60 YEPWELPGLV HDVEERQWFF FVPRYQKKCA RPNRLTKSGY WKATGSDRNI RNDLFHCIGL 120 KKTLVFYNLG KRTDWIMNEY RMPDFSSSAP KKKIDMVLCK IYKKATTQKS MEQRANHSLE 180 VDNKELVDST DEYQEKCYSK SVNVSCKSNP KTDADANDCS LHYLDHEGDC SSLFKTMDEP 240 NLFDCLEPII SWEESMVLNT PTTCKLPPKL ELTNLPMDCI MFSQTVETPY ALLSTPSEFQ 300 IPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-33 | 19 | 169 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-33 | 19 | 169 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-33 | 19 | 169 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-33 | 19 | 169 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-33 | 19 | 169 | 22 | 173 | NAC domain-containing protein 19 |
3swm_B | 7e-33 | 19 | 169 | 22 | 173 | NAC domain-containing protein 19 |
3swm_C | 7e-33 | 19 | 169 | 22 | 173 | NAC domain-containing protein 19 |
3swm_D | 7e-33 | 19 | 169 | 22 | 173 | NAC domain-containing protein 19 |
3swp_A | 7e-33 | 19 | 169 | 22 | 173 | NAC domain-containing protein 19 |
3swp_B | 7e-33 | 19 | 169 | 22 | 173 | NAC domain-containing protein 19 |
3swp_C | 7e-33 | 19 | 169 | 22 | 173 | NAC domain-containing protein 19 |
3swp_D | 7e-33 | 19 | 169 | 22 | 173 | NAC domain-containing protein 19 |
4dul_A | 5e-33 | 19 | 169 | 19 | 170 | NAC domain-containing protein 19 |
4dul_B | 5e-33 | 19 | 169 | 19 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008791987.1 | 8e-55 | NAC domain-containing protein 22-like | ||||
Refseq | XP_010943933.2 | 4e-54 | NAC domain-containing protein 22 | ||||
Refseq | XP_015690518.1 | 6e-54 | PREDICTED: NAC domain-containing protein 67 isoform X2 | ||||
Swissprot | Q10S65 | 2e-52 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A075M5N5 | 1e-106 | A0A075M5N5_9SPER; NAC domain protein | ||||
STRING | XP_008791987.1 | 3e-54 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 4e-49 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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