PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00009980-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 285aa MW: 33172.9 Da PI: 7.0922 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 130.7 | 1.1e-40 | 17 | 144 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 pGfr hPt+eel+ +yLkk++e l+++++i+++d+y++ePw+Lp ++ +e++w+fF++r++k+ r+nr tksgyWkatg+d++ PSME_00009980-RA 17 PGFRSHPTEEELLGFYLKKRIELGAgypLNFDKIIPTIDLYQYEPWELPgLVHDVGERQWFFFVPRHQKKC--ARPNRLTKSGYWKATGSDRN 107 9********************9887777889889***************556667999********99875..7******************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + +glkktLvfy+g+ap g++tdW+m+eyr+ PSME_00009980-RA 108 IRNGLFHCIGLKKTLVFYNGKAPLGKRTDWIMNEYRM 144 ***88889***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-43 | 14 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.882 | 15 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-22 | 17 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
EKICKDGVVQ VELMDFPGFR SHPTEEELLG FYLKKRIELG AGYPLNFDKI IPTIDLYQYE 60 PWELPGLVHD VGERQWFFFV PRHQKKCARP NRLTKSGYWK ATGSDRNIRN GLFHCIGLKK 120 TLVFYNGKAP LGKRTDWIMN EYRMPDFSSC APKKKSNMVL CKIYKKDTSQ KSMEQRANHS 180 LEVDNKEFVD STDEYQEKCY SKSVNVSCNS NRMTDADAND CSLHYLDHEG DCSSLFKTMD 240 EFNLFDCLEP IMSWEESMVL KTPQSCKPPQ LELPKLSMDF LFTSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-37 | 6 | 171 | 10 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-37 | 6 | 171 | 10 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-37 | 6 | 171 | 10 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-37 | 6 | 171 | 10 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-37 | 6 | 171 | 13 | 173 | NAC domain-containing protein 19 |
3swm_B | 4e-37 | 6 | 171 | 13 | 173 | NAC domain-containing protein 19 |
3swm_C | 4e-37 | 6 | 171 | 13 | 173 | NAC domain-containing protein 19 |
3swm_D | 4e-37 | 6 | 171 | 13 | 173 | NAC domain-containing protein 19 |
3swp_A | 4e-37 | 6 | 171 | 13 | 173 | NAC domain-containing protein 19 |
3swp_B | 4e-37 | 6 | 171 | 13 | 173 | NAC domain-containing protein 19 |
3swp_C | 4e-37 | 6 | 171 | 13 | 173 | NAC domain-containing protein 19 |
3swp_D | 4e-37 | 6 | 171 | 13 | 173 | NAC domain-containing protein 19 |
4dul_A | 4e-37 | 6 | 171 | 10 | 170 | NAC domain-containing protein 19 |
4dul_B | 4e-37 | 6 | 171 | 10 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008791987.1 | 1e-60 | NAC domain-containing protein 22-like | ||||
Refseq | XP_010943933.2 | 7e-60 | NAC domain-containing protein 22 | ||||
Swissprot | Q10S65 | 1e-55 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A075M5N5 | 1e-104 | A0A075M5N5_9SPER; NAC domain protein | ||||
STRING | XP_008791987.1 | 5e-60 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 2e-52 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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