PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00009898-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 313aa MW: 35943.2 Da PI: 6.3677 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 140.5 | 1e-43 | 49 | 175 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrF Pt++el+++yLkk+++g + l+++ +i+++diyk++Pw+Lp +++ ek+w+fF++r++k+ r++r t sgyWkatg+d+++ PSME_00009898-RA 49 IPGFRFYPTEQELLSFYLKKRIQGGQpLNFDIIIPTLDIYKYDPWELPgLAIDVAEKQWFFFVPRETKKC--ARPTRLTVSGYWKATGSDRAI 139 69*********************9985666666***************77888999*********99875..7******************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ e +glkktLvfykg+ap g++tdW+m+eyr+ PSME_00009898-RA 140 RNEMLECIGLKKTLVFYKGKAPLGQRTDWIMNEYRM 175 **99999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-47 | 43 | 198 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.105 | 48 | 198 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-23 | 50 | 175 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MHLSEISIYA EHVETIYVSC SRDQIEEMAM AILEEIYNDG SFKGELTVIP GFRFYPTEQE 60 LLSFYLKKRI QGGQPLNFDI IIPTLDIYKY DPWELPGLAI DVAEKQWFFF VPRETKKCAR 120 PTRLTVSGYW KATGSDRAIR NEMLECIGLK KTLVFYKGKA PLGQRTDWIM NEYRMPDLTS 180 SPPKMKNTDM VLCRIYKKAA SQKSMEQRTE SVGVEKGKLV VSARDEYEQK CHSIYFDGSS 240 CQSSPMREAT ISTLHYNANK GVYLNLSKMN NEDNQIQCVE QKMSSEETLV WNVGGIVPTH 300 SYIQLCEGAV NMY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-43 | 45 | 201 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-43 | 45 | 201 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-43 | 45 | 201 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-43 | 45 | 201 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-43 | 45 | 201 | 14 | 168 | NAC domain-containing protein 19 |
4dul_B | 4e-43 | 45 | 201 | 14 | 168 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010941405.1 | 2e-60 | NAC domain-containing protein 22 | ||||
Swissprot | Q10S65 | 4e-56 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A075M5N5 | 7e-98 | A0A075M5N5_9SPER; NAC domain protein | ||||
STRING | Pavir.J01198.1.p | 2e-60 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 9e-57 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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