PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00009490-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | B3 | ||||||||
Protein Properties | Length: 187aa MW: 21935.4 Da PI: 8.7808 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.1 | 4.2e-10 | 67 | 157 | 4 | 97 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + +++ ++sg +++ f++++ ++ ++ t++d + sW+++ y ++++r v+t GW+eF++ ++ k+gD+++ + +++ f +++ PSME_00009490-RA 67 TIQRKYLGRSGKMYFLVIFMKKYLSE--SQGIATFKDCDWFSWRIEWyAYLQSGRRLVFTIGWSEFASNHNGKDGDILLVEILNSEHF--KIQ 155 556678899999***********433..23379*************9456999999*************************7766777..777 PP EE CS B3 96 vf 97 +f PSME_00009490-RA 156 IF 157 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.8E-14 | 59 | 158 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-12 | 60 | 159 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.71E-10 | 62 | 158 | No hit | No description |
PROSITE profile | PS50863 | 9.319 | 64 | 160 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.9E-5 | 64 | 160 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-9 | 67 | 157 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MEIRAQVIWT GKSWLLVDNE TSMMGTKGIF KNRYKPHVGE GLLSPNRDMV IDFVKDIFTE 60 HPSFARTIQR KYLGRSGKMY FLVIFMKKYL SESQGIATFK DCDWFSWRIE WYAYLQSGRR 120 LVFTIGWSEF ASNHNGKDGD ILLVEILNSE HFKIQIFPGE ICMAIKENKA LGCTREVGFQ 180 EFFHYML |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 7e-07 | B3 family protein |