PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00008897-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 27419.1 Da PI: 7.8764 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.2e-19 | 147 | 198 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g++vAeIrdp kr+r++lg+f taeeAa a+++a+ +++g+ PSME_00008897-RA 147 HYRGVRQRR-WGKFVAEIRDP---TrKRARVWLGTFNTAEEAALAYDHAAFRIRGA 198 7*****998.**********8...3346*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.0E-32 | 146 | 206 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.97E-30 | 147 | 207 | No hit | No description |
Pfam | PF00847 | 7.0E-14 | 147 | 197 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.828 | 147 | 205 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-38 | 147 | 211 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-23 | 147 | 207 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.4E-10 | 148 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 171 | 187 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MEFNFCYSSE SAVEIAAGRD QGINMQLEFI RHHLLELDDD EIKIKDVKHA PPNYPDSSTS 60 SISFSSTVIA SCSWDYIHAT ATAIASDSCQ NSGNRSTFED NQNEFTQYYS SSSSVSAVTR 120 REEAVNVNPR PQEEDTGETK HNSKGRHYRG VRQRRWGKFV AEIRDPTRKR ARVWLGTFNT 180 AEEAALAYDH AAFRIRGAKA LLNFPVSFAS NSVNGPAVGH MTHKRKGGTA EEGKACNCRS 240 CGNGSRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-30 | 143 | 206 | 1 | 64 | ATERF1 |
3gcc_A | 4e-30 | 143 | 206 | 1 | 64 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NMA3 | 7e-58 | A9NMA3_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 2e-22 | ethylene responsive element binding factor 1 |