PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008717-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 507aa    MW: 55980.2 Da    PI: 8.6132
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008717-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.11.6e-298106199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +Ca Ck  r kC+++C++ pyfpaeq +k   vhk+FG++n  ++l+++p+++reda++slvyeAe r +d v+G +g+i+ +++++++ + e
  PSME_00008717-RA   8 SCAFCKGFRTKCSENCIFVPYFPAEQDRKAFLVHKVFGVDNAARMLREVPPNHREDAAKSLVYEAEQRFKDTVHGTAGIISLMKRRVNEIRRE 100
                       6*************************99999************************************************************** PP

            DUF260  94 lallke 99 
                       +++l++
  PSME_00008717-RA 101 IEKLRT 106
                       998875 PP
2DUF26076.16.5e-242433375100
            DUF260   5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                       C++ + +C+++C++ pyfp eq+ k   v+ +FG++n  ++l+++p+++re++ +sl++eA++r rd vyG+vg++ ++q+++e+++ +l  +
  PSME_00008717-RA 243 CAFCK-ECSENCIFLPYFPVEQADKALLVRNVFGVDNAARMLSEVPQHHRENLKNSLIFEAQCRDRDLVYGSVGIVVSMQSHVEEHERDLLNA 334
                       55544.6********************************************************************************999877 PP

            DUF260  98 kee 100
                       ++e
  PSME_00008717-RA 335 RAE 337
                       765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.6297108IPR004883Lateral organ boundaries, LOB
PfamPF031958.6E-308105IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089116.379237338IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-23243333IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MVSSSKSSCA FCKGFRTKCS ENCIFVPYFP AEQDRKAFLV HKVFGVDNAA RMLREVPPNH  60
REDAAKSLVY EAEQRFKDTV HGTAGIISLM KRRVNEIRRE IEKLRTVLKQ YQKNENGGKA  120
RQTNSVVQHM EMGMAGTGMG MTSASPIHRD RSMQVSREQP VMERTTQYLT REPELQREEL  180
ARSGGDSYYA ELSTSPHPLH SMQVSRKQPV LEPGSQFQDL AGGGGDPFQA RSSGMAPSSK  240
SSCAFCKECS ENCIFLPYFP VEQADKALLV RNVFGVDNAA RMLSEVPQHH RENLKNSLIF  300
EAQCRDRDLV YGSVGIVVSM QSHVEEHERD LLNARAELFK EIAFQGMYRD STPDASNPGG  360
LLQQAQQTNT EMGMAGMGMG MTSASPLIPQ HSMQISKEEI FVFKPTTRLT REQLLLVELA  420
GGGGGSYDSG LRDSEITQPS PHHHHSTPTI SLGAKNPQDE RAGAVAAAAD GFEQRSSRKL  480
YRGRGRGRGR GRAAKPGDYL AIPAPAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3073406121LOB family transfactor Ramosa2.1
5ly0_B2e-3073406121LOB family transfactor Ramosa2.1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1481491RGRGRGRGRGR
2483492RGRGRGRGRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.18e-31ASYMMETRIC LEAVES 2-like 1