PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00008715-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 255aa MW: 28623.6 Da PI: 9.8034 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96 | 4.1e-30 | 8 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca Ck r kC+++C++ pyfpaeq +k vhk+FG++n ++l+++p+++reda++slvyeAe r +d v+G +g+i+ +++++++ + e PSME_00008715-RA 8 SCAFCKGFRTKCSENCIFVPYFPAEQDRKAFLVHKVFGVHNAARMLREVPPNHREDAAKSLVYEAEQRFKDAVHGTAGIISLMKRRVNEIRRE 100 6*************************99999************************************************************** PP DUF260 94 lallke 99 +++l++ PSME_00008715-RA 101 IEKLRT 106 998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.563 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-30 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVSSSKSSCA FCKGFRTKCS ENCIFVPYFP AEQDRKAFLV HKVFGVHNAA RMLREVPPNH 60 REDAAKSLVY EAEQRFKDAV HGTAGIISLM KRRVNEIRRE IEKLRTVLKQ YQKNEIAVQG 120 INRDASNPGG LLQAQQTNSV VQHMEMGMAG TGMGMATASP IHRYRSMEVS REQPVMERTT 180 QYLTREPELQ RAELARSRGD SYYAGLSTSP HPLHYMQVSR KQPVLEPGPQ FQDLAGGGGD 240 PYQAQSSGLF SKHLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-31 | 7 | 116 | 10 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-31 | 7 | 116 | 10 | 119 | LOB family transfactor Ramosa2.1 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 9e-33 | ASYMMETRIC LEAVES 2-like 1 |