PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00008714-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 439aa MW: 48149.1 Da PI: 8.8303

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00008714-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	55.2	2e-17	5	78	26	99
DUF260 26 qpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 q +k vhk+FG++n ++l+++p+++reda++slvyeAe r +d v+G +g+i+ +++++++ k e+++l++ PSME_00008714-RA 5 QDRKAFLVHKVFGVHNAARMLREVPPNHREDAAKSLVYEAEQRFKDTVHGTAGIISLMKRRVNEIKREIEKLRT 78 55566689************************************************************999875 PP
2	DUF260	48.3	2.8e-15	221	296	25	100
DUF260 25 eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 eq+ k v+k+FG++n ++l+++p+ +re++ +slv+eA++r rd vyG+vg++ ++q+++e+++ +l +++e PSME_00008714-RA 221 EQADKALLVRKVFGVDNAARMLSEVPQYHRENLKNSLVFEAQCRDRDLVYGSVGIVVSMQSHVEEHERDLFNARAE 296 67888899**********************************************************9999877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.027	1	80	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-17	5	77	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	9.41	196	297	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.9E-15	221	292	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MITEQDRKAF LVHKVFGVHN AARMLREVPP NHREDAAKSL VYEAEQRFKD TVHGTAGIIS 60 LMKRRVNEIK REIEKLRTVL KQYQKNEIAV QGINRDASNP GGLLQAQQTN SVVQHMEMGM 120 AGTGMGMTSA SPIHRYRSMQ VSREQPVMER TTQYLTTEPE LQREELARSG GDSYYAGLST 180 SPHPLHSMQV SRKQQVLEPG SQFQDLAGGG GNPSQARSAV EQADKALLVR KVFGVDNAAR 240 MLSEVPQYHR ENLKNSLVFE AQCRDRDLVY GSVGIVVSMQ SHVEEHERDL FNARAELFKE 300 IAFQGMHRDS TLDASNPGGL LQQAQQTNTE MGMAGMGSPT TRLTREQLLL VELAGGGGGS 360 YDSGLGDSEI TQPSPHHHDS TPTTSLGAKN PQDERAGAVA VAADGFEQRS SRKLYRGRGR 420 GKGRAAKPGD YLAIPAPAP

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MITEQDRKAF LVHKVFGVHN AARMLREVPP NHREDAAKSL VYEAEQRFKD TVHGTAGIIS  60
LMKRRVNEIK REIEKLRTVL KQYQKNEIAV QGINRDASNP GGLLQAQQTN SVVQHMEMGM  120
AGTGMGMTSA SPIHRYRSMQ VSREQPVMER TTQYLTTEPE LQREELARSG GDSYYAGLST  180
SPHPLHSMQV SRKQQVLEPG SQFQDLAGGG GNPSQARSAV EQADKALLVR KVFGVDNAAR  240
MLSEVPQYHR ENLKNSLVFE AQCRDRDLVY GSVGIVVSMQ SHVEEHERDL FNARAELFKE  300
IAFQGMHRDS TLDASNPGGL LQQAQQTNTE MGMAGMGSPT TRLTREQLLL VELAGGGGGS  360
YDSGLGDSEI TQPSPHHHDS TPTTSLGAKN PQDERAGAVA VAADGFEQRS SRKLYRGRGR  420
GKGRAAKPGD YLAIPAPAP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-17	4	89	35	120	LOB family transfactor Ramosa2.1
5ly0_B	4e-17	4	89	35	120	LOB family transfactor Ramosa2.1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	415	424	RGRGRGKGRA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-17	ASYMMETRIC LEAVES 2-like 1