PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00008713-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 519aa MW: 57263.7 Da PI: 9.157

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00008713-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.7	1e-29	8	106	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca Ck r kC+++C++ pyfpaeq +k vhk+FG++n ++l+++p+++reda++slvyeAe r +d v+G +g+i+ +++++++ k e PSME_00008713-RA 8 SCAFCKGFRTKCSENCIFVPYFPAEQDRKAFLVHKVFGVHNAARMLREVPPNHREDAAKSLVYEAEQRFKDTVHGTAGIISLMKRRVNEIKRE 100 6***********************99999************************************************************ PP DUF260 94 lallke 99 +++l++ PSME_00008713-RA 101 IEKLRT 106 998875 PP
2	DUF260	75.9	7.3e-24	243	337	5	100
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 C++ + +C+++C++ pyfp eq+ k v+ +FG++n ++l+++p+++re++ +slv+eA++r rd vyG+vg++ ++q+++e+++ +l + PSME_00008713-RA 243 CAFCK-ECSENCIFLPYFPVEQADKALLVRNVFGVDNAARMLSEVPQHHRENLKNSLVFEAQCRDRDLVYGSVGIVVSMQSHVEEHERDLFNA 334 55544.6*******************************************************************************9999777 PP DUF260 98 kee 100 ++e PSME_00008713-RA 335 RAE 337 765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.648	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-30	8	105	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	16.303	237	338	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-23	243	333	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MVSSSKSSCA FCKGFRTKCS ENCIFVPYFP AEQDRKAFLV HKVFGVHNAA RMLREVPPNH 60 REDAAKSLVY EAEQRFKDTV HGTAGIISLM KRRVNEIKRE IEKLRTVLKQ YQKNENGGKA 120 HQTNSVVQHM EMGMAGTGMG MTSASPIHRY RSMQVSREQP VMERTTQYLR REPELQREEL 180 ARSGGDSYYA ELSTSPHPLH SMQVSRKQPV LEQGSQFQDL AGGGGDPSQA RSSGMAPSSK 240 SSCAFCKECS ENCIFLPYFP VEQADKALLV RNVFGVDNAA RMLSEVPQHH RENLKNSLVF 300 EAQCRDRDLV YGSVGIVVSM QSHVEEHERD LFNARAELFK EIAFQGMYRD STPDASNPGG 360 LLQQAQQTNT EMGMAGMGSV GMGMGMTSAS PLIPRHSMQI SKEEIFVFKP TTRLTREQLL 420 LVELAGGGGG SYDSGLRDSE ITQPSPHHHH STPTISLGAK NPQDERAGAV AAAADGFEQR 480 SSRKLYRGRG RGRGRGRAAK PGDYLAIPAP APRSFHAGV

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MVSSSKSSCA FCKGFRTKCS ENCIFVPYFP AEQDRKAFLV HKVFGVHNAA RMLREVPPNH  60
REDAAKSLVY EAEQRFKDTV HGTAGIISLM KRRVNEIKRE IEKLRTVLKQ YQKNENGGKA  120
HQTNSVVQHM EMGMAGTGMG MTSASPIHRY RSMQVSREQP VMERTTQYLR REPELQREEL  180
ARSGGDSYYA ELSTSPHPLH SMQVSRKQPV LEQGSQFQDL AGGGGDPSQA RSSGMAPSSK  240
SSCAFCKECS ENCIFLPYFP VEQADKALLV RNVFGVDNAA RMLSEVPQHH RENLKNSLVF  300
EAQCRDRDLV YGSVGIVVSM QSHVEEHERD LFNARAELFK EIAFQGMYRD STPDASNPGG  360
LLQQAQQTNT EMGMAGMGSV GMGMGMTSAS PLIPRHSMQI SKEEIFVFKP TTRLTREQLL  420
LVELAGGGGG SYDSGLRDSE ITQPSPHHHH STPTISLGAK NPQDERAGAV AAAADGFEQR  480
SSRKLYRGRG RGRGRGRAAK PGDYLAIPAP APRSFHAGV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-30	7	340	6	121	LOB family transfactor Ramosa2.1
5ly0_B	3e-30	7	340	6	121	LOB family transfactor Ramosa2.1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	486	496	RGRGRGRGRGR
2	488	497	RGRGRGRGRA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-30	ASYMMETRIC LEAVES 2-like 1