PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008606-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 672aa    MW: 73217.2 Da    PI: 6.3339
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008606-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.78.8e-32272329260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       +Dg+nWrKYGqK+vkgse+prsYY+Ct++ Cp+kkk+ers+ d++v+ei+Y+g+Hnh+k
  PSME_00008606-RA 272 EDGFNWRKYGQKHVKGSEYPRSYYKCTHPACPTKKKIERSQ-DGHVTEIVYKGNHNHNK 329
                       7****************************************.***************85 PP
2WRKY105.72.4e-33450508159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct agC v+k+ver+++dpk+v++tYeg+Hnh+
  PSME_00008606-RA 450 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCAVRKHVERASHDPKAVITTYEGKHNHD 508
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-28260330IPR003657WRKY domain
PROSITE profilePS5081122.699266330IPR003657WRKY domain
SuperFamilySSF1182903.01E-24270330IPR003657WRKY domain
SMARTSM007744.9E-34271329IPR003657WRKY domain
PfamPF031069.5E-24272327IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-37435510IPR003657WRKY domain
SuperFamilySSF1182903.14E-29442510IPR003657WRKY domain
PROSITE profilePS5081138.836445510IPR003657WRKY domain
SMARTSM007742.7E-39450509IPR003657WRKY domain
PfamPF031066.3E-26451508IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MDYQQEPQPA SSSSSFFFPD QDLDMNSKSF SELLADNNGE GLMWGEDGRK LEFGSAGGVS  60
SNGRGDNSFT ERFAARTGGD LSKLSTARFK TMTPSSLPIP RSPFFSIPAG LSPTSLLDSP  120
VLLATSQDLE SPTTGSFPLQ SFALSTASLD IVKNEDGSCS SFAFNACSNP SSDMQPLGNL  180
ASFGYNHHQS LKGVQDLNDA RVWTSPHFSK TKEPVANSTS QPPMTGTSAM QVIPLHVEHA  240
QTASFDEQQH RQLSDLNQTA IVPSTGVEKP SEDGFNWRKY GQKHVKGSEY PRSYYKCTHP  300
ACPTKKKIER SQDGHVTEIV YKGNHNHNKP QPNRRTGAAA AAARHEEGES AESTDAIVKV  360
EDPSFTPPLR QNSNQLESVG TPEQSSISAS EDDDGRTQMD KFSGDDDADE EDPDSKRRKK  420
EANTVDIIGA TRTIREPRVV VQTTSDIDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTNAG  480
CAVRKHVERA SHDPKAVITT YEGKHNHDVP APRNSSHTNA GLGSGQSSVP LLQNSAVPSS  540
NALALTGPGS QETFSHYDRH SDLGNGYGNN NFMFGRMVNE NINSQNGRAG AGIHQRNMGV  600
GMGFGTFGLE NKHSEIHQAE VPTSFSMQIK PTSHEYSSIG SGSSVQMYYS QSNERDGGLM  660
RPKEEQNGQF LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-38264511578Probable WRKY transcription factor 4
2lex_A3e-38264511578Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2697560.0EU269756.1 Pinus monticola WRKY transcription factor PmWRKY108 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QV380.0A0A0D6QV38_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.26e-97WRKY family protein