PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00008493-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | VOZ | ||||||||
Protein Properties | Length: 218aa MW: 24030.2 Da PI: 4.2818 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 199.1 | 1.5e-61 | 104 | 218 | 1 | 115 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp aflgpkcalwdc+rp qgs+w+qdycs+fh ++alneg+pg+ pvl+p+gidlkdgllfaal ak+ k gipecegaat+kspwna+ PSME_00008493-RA 104 PPPKAFLGPKCALWDCPRPDQGSNWCQDYCSNFHGMVALNEGPPGMGPVLQPGGIDLKDGLLFAALGAKTVVKYFGIPECEGAATKKSPWNAP 196 89******************************************************************************************* PP VOZ 94 elfdlsllegetirewlffdkp 115 elfdl +l+ge irewlffdkp PSME_00008493-RA 197 ELFDLFVLQGEVIREWLFFDKP 218 *********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MLEASLCSSD LSYDMWCLLQ LHEEKDDATS ILAIPYSSKL QLNENTLEAA NPSSFQEAIP 60 PNEMRKDFYV DHANAKAQNI DGTNPEVEEE HIPKFQGPCP GISPPPKAFL GPKCALWDCP 120 RPDQGSNWCQ DYCSNFHGMV ALNEGPPGMG PVLQPGGIDL KDGLLFAALG AKTVVKYFGI 180 PECEGAATKK SPWNAPELFD LFVLQGEVIR EWLFFDKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015576892.1 | 2e-73 | transcription factor VOZ1 isoform X2 | ||||
Swissprot | Q9SGQ0 | 3e-66 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A0B2RK91 | 3e-71 | A0A0B2RK91_GLYSO; Transcription factor VOZ1 isoform A | ||||
TrEMBL | K7LHU8 | 3e-71 | K7LHU8_SOYBN; Uncharacterized protein | ||||
TrEMBL | K7LHV1 | 2e-71 | K7LHV1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G07940.3 | 5e-72 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-68 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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