PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00008475-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 29274.1 Da PI: 5.628 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.4 | 1.1e-10 | 19 | 77 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT...........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.tWktIartmg...........kgRtlkqcksrwqkyl 48 +WT +Ed++l d+++ +G g +W+++ + g +R++k+c++rw +yl PSME_00008475-RA 19 AAWTMQEDKILSDYINIHGLGdSWRSVRDKTGnleiilityqnSRRSGKSCRLRWMNYL 77 68********************78888888888888877777*9*************97 PP | |||||||
2 | Myb_DNA-binding | 54.9 | 1.9e-17 | 83 | 128 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +t+Edel+++++++lG++ W++Ia +++ gRt++++k++w+++l PSME_00008475-RA 83 RGNISTDEDELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 128 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 9.535 | 13 | 77 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.19E-23 | 17 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-7 | 17 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-10 | 19 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-18 | 20 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.83E-6 | 20 | 77 | No hit | No description |
PROSITE profile | PS51294 | 27.169 | 78 | 132 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-16 | 82 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 83 | 128 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-26 | 85 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.97E-12 | 87 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MIMQGGSPRC SRGECLNRAA WTMQEDKILS DYINIHGLGD SWRSVRDKTG NLEIILITYQ 60 NSRRSGKSCR LRWMNYLRPN IKRGNISTDE DELIIRLHRL LGNRWSLIAG RLPGRTDNEI 120 KNYWNTHLRK KIGTLNKPDR IEAKMTEEDI VISSGIDHVP ANQIAVNIEN NITDAQSFDE 180 QSMTLIEEDS ALEICSSDHH NMTSWIFEDE ESIFKSHNGI CLDCTAVQFP LSPIYYPIDF 240 QTTCLFSNEL SLPPQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-22 | 16 | 134 | 5 | 110 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT118942 | 1e-146 | BT118942.1 Picea glauca clone GQ04012_C23 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | I6PZW3 | 1e-50 | I6PZW3_9FABA; Tannin-related R2R3 MYB transcription factor (Fragment) | ||||
STRING | ERN11223 | 3e-50 | (Amborella trichopoda) | ||||
STRING | XP_004507986.1 | 4e-50 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-48 | myb domain protein 3 |