PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00008474-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 126aa MW: 14572.6 Da PI: 8.8449 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.9e-17 | 24 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +t Edel+++++++lG++ W++Ia +++ gRt++++k++w++yl PSME_00008474-RA 24 RGNISTYEDELIIRLHRLLGNR-WSLIAGRLP-GRTGNEIKNYWNTYL 69 7889999***************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.344 | 1 | 18 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-10 | 4 | 30 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.63E-20 | 4 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.605 | 19 | 73 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-15 | 24 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.86E-11 | 31 | 69 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 31 | 70 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MGLNRCSKGC RLRWINYLRP DIKRGNISTY EDELIIRLHR LLGNRWSLIA GRLPGRTGNE 60 IKNYWNTYLK KQIGTLNKRD RIEAKVTELE DTDFSISIDP VGANQIAVNI ENNITDEQCP 120 LEDTVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-19 | 5 | 75 | 40 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016753002.1 | 9e-39 | PREDICTED: transcription factor MYB114-like | ||||
Refseq | XP_017646585.1 | 9e-39 | PREDICTED: transcription factor MYB114-like | ||||
Refseq | XP_026452712.1 | 1e-38 | transcription factor WER-like | ||||
Swissprot | P81393 | 3e-36 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A2U9IY24 | 2e-37 | A0A2U9IY24_CATRO; MYB domain containing protein transparent testa 2a | ||||
STRING | XP_008220568.1 | 8e-38 | (Prunus mume) | ||||
STRING | POPTR_0003s07680.1 | 6e-38 | (Populus trichocarpa) | ||||
STRING | EMJ25813 | 7e-38 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 2e-37 | myb domain protein 7 |
Publications ? help Back to Top | |||
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