PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00008295-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | TCP | ||||||||
Protein Properties | Length: 353aa MW: 38942.9 Da PI: 9.0285 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 78.7 | 1.6e-24 | 30 | 97 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....s 66 +k+ +++++hTkv+g +RRv ++ a r+F+L+ G+++d++ti+WLl++ kpai ++t t + PSME_00008295-RA 30 VKRPSTKDRHTKVNGQGRRVKIPTASAVRIFQLTHGFGHKSDGETIQWLLNKVKPAIMAATCTcvvpT 97 6999*********************************************************9944440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-19 | 34 | 92 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 18.779 | 35 | 89 | IPR017887 | Transcription factor TCP subgroup |
SMART | SM00414 | 4.9E-7 | 264 | 351 | IPR002119 | Histone H2A |
Gene3D | G3DSA:1.10.20.10 | 5.1E-24 | 281 | 346 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.59E-20 | 282 | 345 | IPR009072 | Histone-fold |
Pfam | PF00125 | 3.7E-8 | 285 | 345 | IPR007125 | Histone H2A/H2B/H3 |
PRINTS | PR00620 | 1.7E-14 | 300 | 315 | IPR002119 | Histone H2A |
PRINTS | PR00620 | 1.7E-14 | 315 | 328 | IPR002119 | Histone H2A |
PRINTS | PR00620 | 1.7E-14 | 329 | 343 | IPR002119 | Histone H2A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MSSEVQHQSK ERLLLEGPRS NDPTRNALVV KRPSTKDRHT KVNGQGRRVK IPTASAVRIF 60 QLTHGFGHKS DGETIQWLLN KVKPAIMAAT CTCVVPTLSF SIIGSGTGTV PTLPVSILGS 120 DLDIDKDLVA SLAGEMFVSE LATVAEKKII IDQEKRNKEE EELEDNIFYL VAEKRDISSL 180 LRSAMREKEG AEKGFKELPK SNGENQIDSP QSNGTILDVA ERGLQNTWIG IQASALGNIM 240 KTPRLEIAEL RRTLETLRAA LLGAKLEWHD KFQGFYVLPS DFLVGPIHHL LKSRVSASGR 300 VGATVAIYSV AILEYLIVEV LELAGNANKD IKVKRITPRH LQLALEEMKS LIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1f66_C | 2e-26 | 282 | 352 | 28 | 101 | HISTONE H2A.Z |
1f66_G | 2e-26 | 282 | 352 | 28 | 101 | HISTONE H2A.Z |
3wa9_C | 2e-26 | 282 | 352 | 31 | 104 | Histone H2A.Z |
3wa9_G | 2e-26 | 282 | 352 | 31 | 104 | Histone H2A.Z |
5b31_G | 2e-26 | 282 | 352 | 31 | 104 | Histone H2A.Z |
5b32_G | 2e-26 | 282 | 352 | 31 | 104 | Histone H2A.Z |
5b33_C | 2e-26 | 282 | 352 | 31 | 104 | Histone H2A.Z |
5b33_G | 2e-26 | 282 | 352 | 31 | 104 | Histone H2A.Z |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT104127 | 5e-85 | BT104127.1 Picea glauca clone GQ02806_M01 mRNA sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 6e-27 | TCP family protein |