PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00008248-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | VOZ | ||||||||
Protein Properties | Length: 334aa MW: 37485.4 Da PI: 4.6928 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 149 | 3.2e-46 | 193 | 285 | 1 | 93 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp flgpkcalwdc+rp+qgs w+qdyc +fh ++alneg+pg+ pvlrp+gidlkdgllfa+l ak+ k gipecegaat+kspwn++ PSME_00008248-RA 193 PPPKDFLGPKCALWDCPRPVQGSYWCQDYCRNFHGMVALNEGPPGMGPVLRPGGIDLKDGLLFATLGAKTMVKYFGIPECEGAATKKSPWNSS 285 89*****************************************************************************************85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MVMMGKRSKS MKKSTTHQLF KTKAKNRVDD LEFTDLQQVR KESRVNDSLV LEEQEASLCS 60 PYLSCDMWCL LQLHEEEDDA TSNLAAPYSF KLQLNENTLE AANPSSFQKE IPPNEMIKDF 120 YVDHANAEAQ NIDGTSRSEN IHTESLLHTT DEGLEAAAQM NRDFDHNLCL SLYPEVEEEH 180 IPKFEGPCPG ISPPPKDFLG PKCALWDCPR PVQGSYWCQD YCRNFHGMVA LNEGPPGMGP 240 VLRPGGIDLK DGLLFATLGA KTMVKYFGIP ECEGAATKKS PWNSSLTCLF FKGKLLESGY 300 FLTSHEGILR VETESNDHYQ IIMVVDGMNE ESKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010657013.1 | 5e-78 | PREDICTED: transcription factor VOZ1 | ||||
Refseq | XP_019079230.1 | 5e-78 | PREDICTED: transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 4e-68 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A438EGC1 | 7e-79 | A0A438EGC1_VITVI; Transcription factor VOZ1 | ||||
STRING | VIT_12s0028g02670.t01 | 6e-77 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 2e-65 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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