PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00007454-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | TCP | ||||||||
Protein Properties | Length: 157aa MW: 16608.4 Da PI: 11.1179 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 81.9 | 1.7e-25 | 12 | 90 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............s 66 +k+ +++++hTkv+gR+RRv ++a a ++F+L+ e G+++d++ti+WLl++ k ai ++ gt + PSME_00007454-RA 12 VKRPSTKDRHTKVNGRGRRVIIPAVSAVQIFQLTCEFGHKSDGETIQWLLNKVKLAIMAAIGTsvvptfplpivglgtG 90 6999***********************************************************5555555555555552 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.7E-20 | 16 | 76 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 19.932 | 17 | 71 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MEGIHTRNAL VVKRPSTKDR HTKVNGRGRR VIIPAVSAVQ IFQLTCEFGH KSDGETIQWL 60 LNKVKLAIMA AIGTSVVPTF PLPIVGLGTG TIPAFPVSIL GLGTGTFSAL PMPIVAHVSS 120 NPSKLQQHPQ VPPSSHGILA LSAIGSSVRM GFDFQGE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541424.1 | 2e-27 | transcription factor TCP11 | ||||
Refseq | XP_028196567.1 | 2e-27 | transcription factor TCP11-like | ||||
STRING | GLYMA13G20710.2 | 7e-27 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 8e-27 | TCP family protein |