PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00007256-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GRAS
Protein Properties Length: 704aa    MW: 76941.8 Da    PI: 5.2189
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00007256-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4371.4e-1333317021374
              GRAS   1 lvelLlecAeavssg.dlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPil 91 
                       lv++L++cAeav+ + + + a++++++++ las +g +m ++a+yf+eALa+r+++  +         + + ++ +    +l++ f++++P+l
  PSME_00007256-RA 331 LVHTLMACAEAVQRNlNGAIAREMVKQVRILASAQGGAMSKVATYFAEALARRIYGFLP-------QDTLRFNQNDPLSDVLQFhFYQTCPYL 416
                       689*********99636679************************************333.......3333333333333333444******** PP

              GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                       kf+h++aNqaIlea++g+++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++ +++l+e+g +La++Ae+++v+f+f   va+
  PSME_00007256-RA 417 KFAHFIANQAILEAFSGHQHVHVIDFNLKQGIQWPALIQALALRPGGPPVFRLTGIGPPQPDGTDALQEVGMKLAQLAESINVKFSFCGYVAT 509
                       *****************************************************************************************9999 PP

              GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                       +l+d+++++L+ +p  Ea+aVn++l+lhrlld+s + +  ++d+vL  ++sl+Pk+++vveqeadhn++ Flerf+eal+yys++fdslea  
  PSME_00007256-RA 510 SLADIKPWMLNARPeVEAVAVNSILELHRLLDDSIPGRPgPIDRVLASIRSLKPKILTVVEQEADHNRPVFLERFTEALHYYSTVFDSLEARG 602
                       **************99******************998777*************************************************9988 PP

              GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367
                        ++++e++++++++lgrei+n+vaceg+er+erhe l +W  rl++aGF p++l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL
  PSME_00007256-RA 603 LQAQSEEQVMSEVYLGREICNIVACEGSERVERHEPLFNWTVRLRNAGFWPLHLGSNAFKQASMLLSLFSgGEGYRVEESNGCLTLGWHSRPL 695
                       88889999************************************************************************************* PP

              GRAS 368 vsvSaWr 374
                       +++SaW+
  PSME_00007256-RA 696 IAASAWQ 702
                       ******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.9E-2371144No hitNo description
PfamPF120415.1E-2972136IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098562.743305681IPR005202Transcription factor GRAS
PfamPF035144.7E-131331702IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MKRQHFQLQQ QPPNGHGGRC STVPVNPGLA SMPGSGPIPA TAATGGGSSG SCKGKEVLLK  60
DNSKQGIAVD MELASMGYSV KSSELAQVAH KLEQLEMMMC NGQEEGIISH LSSEAVHYNP  120
SDLGGWIESM LSELHVPVPP PVDQTFQFPQ TAADQSSTVR EASNSVPESS TSTSKGTRSV  180
QNVEQEQQYR VNGSGDGVGA GAGLFELPEV LDRSEFQLQG YPGQGALRDN GIDRMFGSYG  240
GFFSQVLDLS DLLVDDPDVL QEPPPQEASP STLLLQSSSN SSLEVQSGRE HLDEDVTGRE  300
RKRYRVCDPE LPERPVVVMA GADPHESGVR LVHTLMACAE AVQRNLNGAI AREMVKQVRI  360
LASAQGGAMS KVATYFAEAL ARRIYGFLPQ DTLRFNQNDP LSDVLQFHFY QTCPYLKFAH  420
FIANQAILEA FSGHQHVHVI DFNLKQGIQW PALIQALALR PGGPPVFRLT GIGPPQPDGT  480
DALQEVGMKL AQLAESINVK FSFCGYVATS LADIKPWMLN ARPEVEAVAV NSILELHRLL  540
DDSIPGRPGP IDRVLASIRS LKPKILTVVE QEADHNRPVF LERFTEALHY YSTVFDSLEA  600
RGLQAQSEEQ VMSEVYLGRE ICNIVACEGS ERVERHEPLF NWTVRLRNAG FWPLHLGSNA  660
FKQASMLLSL FSGGEGYRVE ESNGCLTLGW HSRPLIAASA WQCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-6232670113377Protein SCARECROW
5b3h_D5e-6232670113377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021689576.10.0DELLA protein GAI
SwissprotQ9ST480.0DWRF8_MAIZE; DELLA protein DWARF8
TrEMBLX5CHV10.0X5CHV1_PINTB; DPL
STRINGEOY010290.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-175GRAS family protein
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]