PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006897-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 486aa    MW: 55448 Da    PI: 4.7154
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006897-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-1765108146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ ++eEdellv+++++lG++ W++Ia +++ gRt++++k++w++
  PSME_00006897-RA  65 RGNISPEEDELLVRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 108
                       7899******************.*********.***********97 PP
2Myb_DNA-binding48.42.2e-15299346148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+WT+ Ed++l +++k +G g W++ +++ g++R++k+c++rw++yl
  PSME_00006897-RA 299 RGAWTASEDKILSEYIKNHGDGGWRSLPNRAGLKRCPKSCRLRWLNYL 346
                       89********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-81248IPR009057Homeodomain-like
PROSITE profilePS500906.3651448IPR017877Myb-like domain
SuperFamilySSF466894.03E-1816106IPR009057Homeodomain-like
PROSITE profilePS5129424.22360114IPR017930Myb domain
SMARTSM007175.7E-1764112IPR001005SANT/Myb domain
PfamPF002491.7E-1565108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-2266110IPR009057Homeodomain-like
CDDcd001673.18E-1269110No hitNo description
PROSITE profilePS5129421.085294350IPR017930Myb domain
SMARTSM007171.9E-11298348IPR001005SANT/Myb domain
PfamPF002493.1E-14299346IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-21300362IPR009057Homeodomain-like
SuperFamilySSF466893.14E-17300363IPR009057Homeodomain-like
CDDcd001672.66E-8301346No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
SIMGRSPSCS KHENQSLNHG VWTASEDKIL SEYIKNHGDG GWRSLANRAA SNDVGKVADC  60
VDIKRGNISP EEDELLVRLH RLLGNRWSLI AGRLPGRTDN EIKNYWNTRL SKRVRMGEFE  120
PKFQKINKRS SDIPSSSEKE DVDKENYTAQ TLPLKTKAVR YSGRTVADIF KYDHVVHDTR  180
DAIDQEEGLK VADNDDEEID TSKSWSQLLV EDCMEDYQQD LLQEINGLQP KSMINTNNGT  240
DDHHYIIVQE SSSSSYCNLI NQEFPHSEDF NCSYFDSFLD LGHLSPSSSK HDQDRSLNRG  300
AWTASEDKIL SEYIKNHGDG GWRSLPNRAG LKRCPKSCRL RWLNYLRPDI KRGNISPEED  360
ELVDNHDGIN QEEVCLKAAD NDVQEIDTSK SWSQLLVEDC MEDYQQDRLE EINGLQPNSM  420
IINTNNGTYD HHQFPSPSLS QSIIVQENSS SSYCNLINQE FPHSKDFNCS YFDSFLDLGE  480
LSILLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-141411422128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2H4Z0B01e-132A0A2H4Z0B0_9SPER; R2R3 MYB transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.17e-39myb domain protein 3